Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24078 | 5' | -54.4 | NC_005262.1 | + | 32811 | 0.7 | 0.592689 |
Target: 5'- cGCguucgACGUCGGCcucAUGuCCGGCGACg -3' miRNA: 3'- cCGaca--UGCAGCCGc--UAU-GGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 58831 | 0.7 | 0.571064 |
Target: 5'- uGGCUGcUGCGgcgcuUCGGCacgcagAUCGGCGACg -3' miRNA: 3'- -CCGAC-AUGC-----AGCCGcua---UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 15790 | 0.7 | 0.571064 |
Target: 5'- uGGgUGUugGUcgCGGgGGUGCCGGgGAa -3' miRNA: 3'- -CCgACAugCA--GCCgCUAUGGCCgUUg -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 20735 | 0.69 | 0.625349 |
Target: 5'- aGCUGccGCGgCGcGCGGUGCCGGCc-- -3' miRNA: 3'- cCGACa-UGCaGC-CGCUAUGGCCGuug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 17128 | 0.69 | 0.625349 |
Target: 5'- cGGCgg-GCGUCGGU---GCCGGCGc- -3' miRNA: 3'- -CCGacaUGCAGCCGcuaUGGCCGUug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 60523 | 0.69 | 0.658061 |
Target: 5'- cGCUGcUugGUCGGCGAaaagACCGuCGAg -3' miRNA: 3'- cCGAC-AugCAGCCGCUa---UGGCcGUUg -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 63666 | 0.69 | 0.658061 |
Target: 5'- uGGCUGgaauUGcCGGCGA---CGGCGACg -3' miRNA: 3'- -CCGACau--GCaGCCGCUaugGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 35708 | 0.69 | 0.614444 |
Target: 5'- cGCUccgGCGUCGGCGGga-CGGCcACg -3' miRNA: 3'- cCGAca-UGCAGCCGCUaugGCCGuUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 58891 | 0.69 | 0.625349 |
Target: 5'- uGGCUGcugccGCGcUGcGCGAUcagGCCGGCGGCc -3' miRNA: 3'- -CCGACa----UGCaGC-CGCUA---UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 21629 | 0.69 | 0.63626 |
Target: 5'- cGgaGUGCGaCGGCGA---CGGCGACg -3' miRNA: 3'- cCgaCAUGCaGCCGCUaugGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 37004 | 0.69 | 0.63626 |
Target: 5'- -----aACGUCGGCGAgacggacAUCGGCGGCg -3' miRNA: 3'- ccgacaUGCAGCCGCUa------UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 31367 | 0.68 | 0.668931 |
Target: 5'- -----cAUGcCGGCGAUgaaACCGGCAGCg -3' miRNA: 3'- ccgacaUGCaGCCGCUA---UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 28608 | 0.68 | 0.690558 |
Target: 5'- aGGCUGgccACG-CGGCGGUcgugaccucauuGCCGcCAGCg -3' miRNA: 3'- -CCGACa--UGCaGCCGCUA------------UGGCcGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 62657 | 0.68 | 0.711965 |
Target: 5'- uGCga-GCGUCGGgGGUGgguuuaguccgcCCGGCGGCg -3' miRNA: 3'- cCGacaUGCAGCCgCUAU------------GGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 49211 | 0.68 | 0.668931 |
Target: 5'- uGCUGgcCGagGGCGGccUCGGCGGCg -3' miRNA: 3'- cCGACauGCagCCGCUauGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 51427 | 0.68 | 0.701294 |
Target: 5'- cGGCgcgcGCGagGGCGAUACCGucaCGACg -3' miRNA: 3'- -CCGaca-UGCagCCGCUAUGGCc--GUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 13499 | 0.68 | 0.701294 |
Target: 5'- cGCUG-GCGaaGGCGAaGgCGGCGGCa -3' miRNA: 3'- cCGACaUGCagCCGCUaUgGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 40749 | 0.68 | 0.711965 |
Target: 5'- cGGCgGcGCGUuccaaaucaaCGGCuAUGCUGGCGGCa -3' miRNA: 3'- -CCGaCaUGCA----------GCCGcUAUGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 27295 | 0.68 | 0.722558 |
Target: 5'- --aUGaGCG-CGGCGAgcaagAUCGGCAGCa -3' miRNA: 3'- ccgACaUGCaGCCGCUa----UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 11642 | 0.68 | 0.719388 |
Target: 5'- cGGCUcGgcgGCGcCGGCGucgcgcugcacgcugGCCGGCAGa -3' miRNA: 3'- -CCGA-Ca--UGCaGCCGCua-------------UGGCCGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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