Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24078 | 5' | -54.4 | NC_005262.1 | + | 50912 | 0.68 | 0.711965 |
Target: 5'- gGGCUGaUGCGcaCGaGCGucaccGUGCaCGGCAGCg -3' miRNA: 3'- -CCGAC-AUGCa-GC-CGC-----UAUG-GCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 51427 | 0.68 | 0.701294 |
Target: 5'- cGGCgcgcGCGagGGCGAUACCGucaCGACg -3' miRNA: 3'- -CCGaca-UGCagCCGCUAUGGCc--GUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 13499 | 0.68 | 0.701294 |
Target: 5'- cGCUG-GCGaaGGCGAaGgCGGCGGCa -3' miRNA: 3'- cCGACaUGCagCCGCUaUgGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 40749 | 0.68 | 0.711965 |
Target: 5'- cGGCgGcGCGUuccaaaucaaCGGCuAUGCUGGCGGCa -3' miRNA: 3'- -CCGaCaUGCA----------GCCGcUAUGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 62657 | 0.68 | 0.711965 |
Target: 5'- uGCga-GCGUCGGgGGUGgguuuaguccgcCCGGCGGCg -3' miRNA: 3'- cCGacaUGCAGCCgCUAU------------GGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 11642 | 0.68 | 0.719388 |
Target: 5'- cGGCUcGgcgGCGcCGGCGucgcgcugcacgcugGCCGGCAGa -3' miRNA: 3'- -CCGA-Ca--UGCaGCCGCua-------------UGGCCGUUg -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 27295 | 0.68 | 0.722558 |
Target: 5'- --aUGaGCG-CGGCGAgcaagAUCGGCAGCa -3' miRNA: 3'- ccgACaUGCaGCCGCUa----UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 31367 | 0.68 | 0.668931 |
Target: 5'- -----cAUGcCGGCGAUgaaACCGGCAGCg -3' miRNA: 3'- ccgacaUGCaGCCGCUA---UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 49211 | 0.68 | 0.668931 |
Target: 5'- uGCUGgcCGagGGCGGccUCGGCGGCg -3' miRNA: 3'- cCGACauGCagCCGCUauGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 6575 | 0.68 | 0.711965 |
Target: 5'- cGGCgc-GCGUC-GCGAUGCCGcCGACc -3' miRNA: 3'- -CCGacaUGCAGcCGCUAUGGCcGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 33641 | 0.67 | 0.733062 |
Target: 5'- aGCUucGCGUCGGCauccGCCGGCGc- -3' miRNA: 3'- cCGAcaUGCAGCCGcua-UGGCCGUug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 33709 | 0.67 | 0.753762 |
Target: 5'- cGGCgUGU-CGUcgcccuucuugcCGGCGucgucgucGCCGGCAGCa -3' miRNA: 3'- -CCG-ACAuGCA------------GCCGCua------UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 46905 | 0.67 | 0.763935 |
Target: 5'- gGGCgGUGCGgugUGGUGcgGCCcGGCGcGCg -3' miRNA: 3'- -CCGaCAUGCa--GCCGCuaUGG-CCGU-UG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 42271 | 0.67 | 0.773974 |
Target: 5'- cGGCg--ACGagCGGCacgGGcACCGGCGACg -3' miRNA: 3'- -CCGacaUGCa-GCCG---CUaUGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 25916 | 0.67 | 0.763935 |
Target: 5'- cGCgcaugGUACGUCGccacgcGCGAcgccgacuuuCCGGCAACg -3' miRNA: 3'- cCGa----CAUGCAGC------CGCUau--------GGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 31942 | 0.67 | 0.743467 |
Target: 5'- uGCUGUACGgCGGUG----UGGCGACg -3' miRNA: 3'- cCGACAUGCaGCCGCuaugGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 5177 | 0.67 | 0.763935 |
Target: 5'- cGGCcg-GCGUCgcgggcgcgGGCGcgGCCGGCGc- -3' miRNA: 3'- -CCGacaUGCAG---------CCGCuaUGGCCGUug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 38700 | 0.67 | 0.753762 |
Target: 5'- uGCUGUGCugccCGGCGAa---GGCAGCa -3' miRNA: 3'- cCGACAUGca--GCCGCUauggCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 61229 | 0.67 | 0.743467 |
Target: 5'- cGCUGaaaUACGUgUGGCGcaccuacACCGGCGGCc -3' miRNA: 3'- cCGAC---AUGCA-GCCGCua-----UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 27374 | 0.67 | 0.733062 |
Target: 5'- aGGCcGU-CGUCGGCGccuccgcgaacGUGgacuUCGGCGACg -3' miRNA: 3'- -CCGaCAuGCAGCCGC-----------UAU----GGCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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