miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 45233 0.7 0.603554
Target:  5'- cGGcCUGaACGccggcaacUCGGCGA--CCGGCAACc -3'
miRNA:   3'- -CC-GACaUGC--------AGCCGCUauGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 35226 0.7 0.603554
Target:  5'- uGCgg-AgGUCGGCGGcgcgAUCGGCAGCg -3'
miRNA:   3'- cCGacaUgCAGCCGCUa---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 4419 0.7 0.603554
Target:  5'- uGCUGcGCGagcgccuggagcUCGGCGuUGCCGGCGuACu -3'
miRNA:   3'- cCGACaUGC------------AGCCGCuAUGGCCGU-UG- -5'
24078 5' -54.4 NC_005262.1 + 35708 0.69 0.614444
Target:  5'- cGCUccgGCGUCGGCGGga-CGGCcACg -3'
miRNA:   3'- cCGAca-UGCAGCCGCUaugGCCGuUG- -5'
24078 5' -54.4 NC_005262.1 + 58891 0.69 0.625349
Target:  5'- uGGCUGcugccGCGcUGcGCGAUcagGCCGGCGGCc -3'
miRNA:   3'- -CCGACa----UGCaGC-CGCUA---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 20735 0.69 0.625349
Target:  5'- aGCUGccGCGgCGcGCGGUGCCGGCc-- -3'
miRNA:   3'- cCGACa-UGCaGC-CGCUAUGGCCGuug -5'
24078 5' -54.4 NC_005262.1 + 17128 0.69 0.625349
Target:  5'- cGGCgg-GCGUCGGU---GCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAGCCGcuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 21629 0.69 0.63626
Target:  5'- cGgaGUGCGaCGGCGA---CGGCGACg -3'
miRNA:   3'- cCgaCAUGCaGCCGCUaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 37004 0.69 0.63626
Target:  5'- -----aACGUCGGCGAgacggacAUCGGCGGCg -3'
miRNA:   3'- ccgacaUGCAGCCGCUa------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 60523 0.69 0.658061
Target:  5'- cGCUGcUugGUCGGCGAaaagACCGuCGAg -3'
miRNA:   3'- cCGAC-AugCAGCCGCUa---UGGCcGUUg -5'
24078 5' -54.4 NC_005262.1 + 63666 0.69 0.658061
Target:  5'- uGGCUGgaauUGcCGGCGA---CGGCGACg -3'
miRNA:   3'- -CCGACau--GCaGCCGCUaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 31367 0.68 0.668931
Target:  5'- -----cAUGcCGGCGAUgaaACCGGCAGCg -3'
miRNA:   3'- ccgacaUGCaGCCGCUA---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 15108 0.68 0.668931
Target:  5'- cGGCgcgGCGUcCGGCuGGaacgcgcugGCCGGCAGCu -3'
miRNA:   3'- -CCGacaUGCA-GCCG-CUa--------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 49211 0.68 0.668931
Target:  5'- uGCUGgcCGagGGCGGccUCGGCGGCg -3'
miRNA:   3'- cCGACauGCagCCGCUauGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 7002 0.68 0.668931
Target:  5'- cGCUcgACGUCGGCcuucagGCCGGcCAGCu -3'
miRNA:   3'- cCGAcaUGCAGCCGcua---UGGCC-GUUG- -5'
24078 5' -54.4 NC_005262.1 + 18824 0.68 0.690558
Target:  5'- uGCUGcACGUCGGCccucGCCucGGCGGCc -3'
miRNA:   3'- cCGACaUGCAGCCGcua-UGG--CCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 28608 0.68 0.690558
Target:  5'- aGGCUGgccACG-CGGCGGUcgugaccucauuGCCGcCAGCg -3'
miRNA:   3'- -CCGACa--UGCaGCCGCUA------------UGGCcGUUG- -5'
24078 5' -54.4 NC_005262.1 + 51427 0.68 0.701294
Target:  5'- cGGCgcgcGCGagGGCGAUACCGucaCGACg -3'
miRNA:   3'- -CCGaca-UGCagCCGCUAUGGCc--GUUG- -5'
24078 5' -54.4 NC_005262.1 + 13499 0.68 0.701294
Target:  5'- cGCUG-GCGaaGGCGAaGgCGGCGGCa -3'
miRNA:   3'- cCGACaUGCagCCGCUaUgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 34135 0.68 0.705571
Target:  5'- gGGCUGcGCGggcgcgggCGGCaugccgcucgcugccGAUGCCGGUuGCg -3'
miRNA:   3'- -CCGACaUGCa-------GCCG---------------CUAUGGCCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.