miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 780 0.66 0.803185
Target:  5'- aGGUUcggGCGU-GGCuugACCGGCAGCa -3'
miRNA:   3'- -CCGAca-UGCAgCCGcuaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 3681 0.76 0.265653
Target:  5'- cGCUGgccgugACGaCGGUGAUGCCGGCGccgACa -3'
miRNA:   3'- cCGACa-----UGCaGCCGCUAUGGCCGU---UG- -5'
24078 5' -54.4 NC_005262.1 + 4419 0.7 0.603554
Target:  5'- uGCUGcGCGagcgccuggagcUCGGCGuUGCCGGCGuACu -3'
miRNA:   3'- cCGACaUGC------------AGCCGCuAUGGCCGU-UG- -5'
24078 5' -54.4 NC_005262.1 + 5177 0.67 0.763935
Target:  5'- cGGCcg-GCGUCgcgggcgcgGGCGcgGCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAG---------CCGCuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 6575 0.68 0.711965
Target:  5'- cGGCgc-GCGUC-GCGAUGCCGcCGACc -3'
miRNA:   3'- -CCGacaUGCAGcCGCUAUGGCcGUUG- -5'
24078 5' -54.4 NC_005262.1 + 6851 0.78 0.207263
Target:  5'- cGGCUcgACGaucaggccguaguccUCGGCGAUGCCGGCcGCg -3'
miRNA:   3'- -CCGAcaUGC---------------AGCCGCUAUGGCCGuUG- -5'
24078 5' -54.4 NC_005262.1 + 7002 0.68 0.668931
Target:  5'- cGCUcgACGUCGGCcuucagGCCGGcCAGCu -3'
miRNA:   3'- cCGAcaUGCAGCCGcua---UGGCC-GUUG- -5'
24078 5' -54.4 NC_005262.1 + 7620 0.66 0.821797
Target:  5'- cGCUuaccggACGUUGGCcgaaugucGAcGCCGGCGGCg -3'
miRNA:   3'- cCGAca----UGCAGCCG--------CUaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 11091 0.71 0.517987
Target:  5'- cGGCcu--CGUcCGGCGucgGCCGGCGGCc -3'
miRNA:   3'- -CCGacauGCA-GCCGCua-UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 11642 0.68 0.719388
Target:  5'- cGGCUcGgcgGCGcCGGCGucgcgcugcacgcugGCCGGCAGa -3'
miRNA:   3'- -CCGA-Ca--UGCaGCCGCua-------------UGGCCGUUg -5'
24078 5' -54.4 NC_005262.1 + 12422 0.66 0.803185
Target:  5'- cGGCcuUGgccgGCGUCGcggacggcGCGGUGCCGaGCuGCa -3'
miRNA:   3'- -CCG--ACa---UGCAGC--------CGCUAUGGC-CGuUG- -5'
24078 5' -54.4 NC_005262.1 + 12842 0.68 0.722558
Target:  5'- cGGCc-UGCGUCGGCuucagcucgGcgGCCGGCAc- -3'
miRNA:   3'- -CCGacAUGCAGCCG---------CuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 13499 0.68 0.701294
Target:  5'- cGCUG-GCGaaGGCGAaGgCGGCGGCa -3'
miRNA:   3'- cCGACaUGCagCCGCUaUgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 13832 0.71 0.539012
Target:  5'- cGCUGUcuCGUCGGCGA--UCGGCucgAACg -3'
miRNA:   3'- cCGACAu-GCAGCCGCUauGGCCG---UUG- -5'
24078 5' -54.4 NC_005262.1 + 15108 0.68 0.668931
Target:  5'- cGGCgcgGCGUcCGGCuGGaacgcgcugGCCGGCAGCu -3'
miRNA:   3'- -CCGacaUGCA-GCCG-CUa--------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 15790 0.7 0.571064
Target:  5'- uGGgUGUugGUcgCGGgGGUGCCGGgGAa -3'
miRNA:   3'- -CCgACAugCA--GCCgCUAUGGCCgUUg -5'
24078 5' -54.4 NC_005262.1 + 17042 0.66 0.812584
Target:  5'- cGcCUGUACGacCGGCG-UGgCGGCGAUc -3'
miRNA:   3'- cC-GACAUGCa-GCCGCuAUgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 17128 0.69 0.625349
Target:  5'- cGGCgg-GCGUCGGU---GCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAGCCGcuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 18824 0.68 0.690558
Target:  5'- uGCUGcACGUCGGCccucGCCucGGCGGCc -3'
miRNA:   3'- cCGACaUGCAGCCGcua-UGG--CCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 19449 0.67 0.743467
Target:  5'- cGCUGgGCGUUGGCcucGAUgcucACCGGaCGGCc -3'
miRNA:   3'- cCGACaUGCAGCCG---CUA----UGGCC-GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.