miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 20735 0.69 0.625349
Target:  5'- aGCUGccGCGgCGcGCGGUGCCGGCc-- -3'
miRNA:   3'- cCGACa-UGCaGC-CGCUAUGGCCGuug -5'
24078 5' -54.4 NC_005262.1 + 21629 0.69 0.63626
Target:  5'- cGgaGUGCGaCGGCGA---CGGCGACg -3'
miRNA:   3'- cCgaCAUGCaGCCGCUaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 22103 0.68 0.722558
Target:  5'- uGGCUGcggcauagAUGcCGaugcCGGUGCCGGCGGCg -3'
miRNA:   3'- -CCGACa-------UGCaGCc---GCUAUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 24347 0.77 0.233727
Target:  5'- cGGCUcUGCGUCGGCGcgccugAUACCuGCAACc -3'
miRNA:   3'- -CCGAcAUGCAGCCGC------UAUGGcCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 24859 0.66 0.79361
Target:  5'- uGCgccaGUGC-UCGGCGAUgugcauccGCCGGCGc- -3'
miRNA:   3'- cCGa---CAUGcAGCCGCUA--------UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 25916 0.67 0.763935
Target:  5'- cGCgcaugGUACGUCGccacgcGCGAcgccgacuuuCCGGCAACg -3'
miRNA:   3'- cCGa----CAUGCAGC------CGCUau--------GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 27295 0.68 0.722558
Target:  5'- --aUGaGCG-CGGCGAgcaagAUCGGCAGCa -3'
miRNA:   3'- ccgACaUGCaGCCGCUa----UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 27374 0.67 0.733062
Target:  5'- aGGCcGU-CGUCGGCGccuccgcgaacGUGgacuUCGGCGACg -3'
miRNA:   3'- -CCGaCAuGCAGCCGC-----------UAU----GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 28608 0.68 0.690558
Target:  5'- aGGCUGgccACG-CGGCGGUcgugaccucauuGCCGcCAGCg -3'
miRNA:   3'- -CCGACa--UGCaGCCGCUA------------UGGCcGUUG- -5'
24078 5' -54.4 NC_005262.1 + 30416 0.66 0.803185
Target:  5'- aGCUGggcgGCGUCGaCGAUcacgGCCGGCn-- -3'
miRNA:   3'- cCGACa---UGCAGCcGCUA----UGGCCGuug -5'
24078 5' -54.4 NC_005262.1 + 30446 0.74 0.364944
Target:  5'- gGGUUGU-CGaUCGGCGGcacggUGCCGcGCAGCg -3'
miRNA:   3'- -CCGACAuGC-AGCCGCU-----AUGGC-CGUUG- -5'
24078 5' -54.4 NC_005262.1 + 30992 0.68 0.711965
Target:  5'- aGGCcg-ACGUCGaacGCGAUgGCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAGC---CGCUA-UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 31367 0.68 0.668931
Target:  5'- -----cAUGcCGGCGAUgaaACCGGCAGCg -3'
miRNA:   3'- ccgacaUGCaGCCGCUA---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 31942 0.67 0.743467
Target:  5'- uGCUGUACGgCGGUG----UGGCGACg -3'
miRNA:   3'- cCGACAUGCaGCCGCuaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 32169 0.66 0.812584
Target:  5'- cGCcGUAgGUCGGCu-UGCCGcGCAGg -3'
miRNA:   3'- cCGaCAUgCAGCCGcuAUGGC-CGUUg -5'
24078 5' -54.4 NC_005262.1 + 32737 0.66 0.783869
Target:  5'- cGGCgagcGCGUCGGCG---UCGGuCAGCa -3'
miRNA:   3'- -CCGaca-UGCAGCCGCuauGGCC-GUUG- -5'
24078 5' -54.4 NC_005262.1 + 32811 0.7 0.592689
Target:  5'- cGCguucgACGUCGGCcucAUGuCCGGCGACg -3'
miRNA:   3'- cCGaca--UGCAGCCGc--UAU-GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 32879 0.77 0.233727
Target:  5'- aGCUGUucgccgcgucgaACGUCGGCcaaGCCGGCGGCg -3'
miRNA:   3'- cCGACA------------UGCAGCCGcuaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 33641 0.67 0.733062
Target:  5'- aGCUucGCGUCGGCauccGCCGGCGc- -3'
miRNA:   3'- cCGAcaUGCAGCCGcua-UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 33709 0.67 0.753762
Target:  5'- cGGCgUGU-CGUcgcccuucuugcCGGCGucgucgucGCCGGCAGCa -3'
miRNA:   3'- -CCG-ACAuGCA------------GCCGCua------UGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.