miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 63666 0.69 0.658061
Target:  5'- uGGCUGgaauUGcCGGCGA---CGGCGACg -3'
miRNA:   3'- -CCGACau--GCaGCCGCUaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 62657 0.68 0.711965
Target:  5'- uGCga-GCGUCGGgGGUGgguuuaguccgcCCGGCGGCg -3'
miRNA:   3'- cCGacaUGCAGCCgCUAU------------GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 61229 0.67 0.743467
Target:  5'- cGCUGaaaUACGUgUGGCGcaccuacACCGGCGGCc -3'
miRNA:   3'- cCGAC---AUGCA-GCCGCua-----UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 60523 0.69 0.658061
Target:  5'- cGCUGcUugGUCGGCGAaaagACCGuCGAg -3'
miRNA:   3'- cCGAC-AugCAGCCGCUa---UGGCcGUUg -5'
24078 5' -54.4 NC_005262.1 + 59335 0.72 0.465988
Target:  5'- cGGCUGaUGCGaacGCGAUcaucgcaaaguacGCCGGCAACg -3'
miRNA:   3'- -CCGAC-AUGCagcCGCUA-------------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 58891 0.69 0.625349
Target:  5'- uGGCUGcugccGCGcUGcGCGAUcagGCCGGCGGCc -3'
miRNA:   3'- -CCGACa----UGCaGC-CGCUA---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 58831 0.7 0.571064
Target:  5'- uGGCUGcUGCGgcgcuUCGGCacgcagAUCGGCGACg -3'
miRNA:   3'- -CCGAC-AUGC-----AGCCGcua---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 57060 0.71 0.507596
Target:  5'- aGGCUGaUAcCGccgagcagaUCGGCGAgAUCGGCGGCu -3'
miRNA:   3'- -CCGAC-AU-GC---------AGCCGCUaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 55918 0.66 0.783869
Target:  5'- cGCaGUACGUcgaccgucCGGCGAUcgagGgCGGCGGCc -3'
miRNA:   3'- cCGaCAUGCA--------GCCGCUA----UgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 54373 0.67 0.743467
Target:  5'- gGGCUGgcagACGUCcgacGCG-UACCugucgGGCAACg -3'
miRNA:   3'- -CCGACa---UGCAGc---CGCuAUGG-----CCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 53976 0.66 0.79361
Target:  5'- cGCUcaagACGcUCGGCGAUGCCuaCGACg -3'
miRNA:   3'- cCGAca--UGC-AGCCGCUAUGGccGUUG- -5'
24078 5' -54.4 NC_005262.1 + 53775 1.11 0.001204
Target:  5'- gGGCUGUACGUCGGCGAUACCGGCAACc -3'
miRNA:   3'- -CCGACAUGCAGCCGCUAUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 53564 0.66 0.81997
Target:  5'- ---gGUGC-UCGGCGcgcacgcgcugACCGGCAGCa -3'
miRNA:   3'- ccgaCAUGcAGCCGCua---------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 51664 0.66 0.812584
Target:  5'- uGGCUcuccaGCG-CGGCGAUcugcucgcgcGCaCGGCGGCg -3'
miRNA:   3'- -CCGAca---UGCaGCCGCUA----------UG-GCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 51427 0.68 0.701294
Target:  5'- cGGCgcgcGCGagGGCGAUACCGucaCGACg -3'
miRNA:   3'- -CCGaca-UGCagCCGCUAUGGCc--GUUG- -5'
24078 5' -54.4 NC_005262.1 + 51097 0.66 0.783869
Target:  5'- aGGCaaggACGUCaaGGCGAUcgugcucgacgcGCCGGuCGACa -3'
miRNA:   3'- -CCGaca-UGCAG--CCGCUA------------UGGCC-GUUG- -5'
24078 5' -54.4 NC_005262.1 + 50912 0.68 0.711965
Target:  5'- gGGCUGaUGCGcaCGaGCGucaccGUGCaCGGCAGCg -3'
miRNA:   3'- -CCGAC-AUGCa-GC-CGC-----UAUG-GCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 49896 0.76 0.272448
Target:  5'- cGGUcgauUGU-CGUCGGCGAcgACgGGCAGCa -3'
miRNA:   3'- -CCG----ACAuGCAGCCGCUa-UGgCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 49848 0.75 0.339915
Target:  5'- uGGCccgGUGCcggCGGCGGUACCGGaAGCa -3'
miRNA:   3'- -CCGa--CAUGca-GCCGCUAUGGCCgUUG- -5'
24078 5' -54.4 NC_005262.1 + 49713 0.74 0.356461
Target:  5'- cGGC-GUGCcgggCGGCGA-ACCGGCGGCc -3'
miRNA:   3'- -CCGaCAUGca--GCCGCUaUGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.