Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24078 | 5' | -54.4 | NC_005262.1 | + | 19449 | 0.67 | 0.743467 |
Target: 5'- cGCUGgGCGUUGGCcucGAUgcucACCGGaCGGCc -3' miRNA: 3'- cCGACaUGCAGCCG---CUA----UGGCC-GUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 18824 | 0.68 | 0.690558 |
Target: 5'- uGCUGcACGUCGGCccucGCCucGGCGGCc -3' miRNA: 3'- cCGACaUGCAGCCGcua-UGG--CCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 17128 | 0.69 | 0.625349 |
Target: 5'- cGGCgg-GCGUCGGU---GCCGGCGc- -3' miRNA: 3'- -CCGacaUGCAGCCGcuaUGGCCGUug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 17042 | 0.66 | 0.812584 |
Target: 5'- cGcCUGUACGacCGGCG-UGgCGGCGAUc -3' miRNA: 3'- cC-GACAUGCa-GCCGCuAUgGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 15790 | 0.7 | 0.571064 |
Target: 5'- uGGgUGUugGUcgCGGgGGUGCCGGgGAa -3' miRNA: 3'- -CCgACAugCA--GCCgCUAUGGCCgUUg -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 15108 | 0.68 | 0.668931 |
Target: 5'- cGGCgcgGCGUcCGGCuGGaacgcgcugGCCGGCAGCu -3' miRNA: 3'- -CCGacaUGCA-GCCG-CUa--------UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 13832 | 0.71 | 0.539012 |
Target: 5'- cGCUGUcuCGUCGGCGA--UCGGCucgAACg -3' miRNA: 3'- cCGACAu-GCAGCCGCUauGGCCG---UUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 13499 | 0.68 | 0.701294 |
Target: 5'- cGCUG-GCGaaGGCGAaGgCGGCGGCa -3' miRNA: 3'- cCGACaUGCagCCGCUaUgGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 12842 | 0.68 | 0.722558 |
Target: 5'- cGGCc-UGCGUCGGCuucagcucgGcgGCCGGCAc- -3' miRNA: 3'- -CCGacAUGCAGCCG---------CuaUGGCCGUug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 12422 | 0.66 | 0.803185 |
Target: 5'- cGGCcuUGgccgGCGUCGcggacggcGCGGUGCCGaGCuGCa -3' miRNA: 3'- -CCG--ACa---UGCAGC--------CGCUAUGGC-CGuUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 11642 | 0.68 | 0.719388 |
Target: 5'- cGGCUcGgcgGCGcCGGCGucgcgcugcacgcugGCCGGCAGa -3' miRNA: 3'- -CCGA-Ca--UGCaGCCGCua-------------UGGCCGUUg -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 11091 | 0.71 | 0.517987 |
Target: 5'- cGGCcu--CGUcCGGCGucgGCCGGCGGCc -3' miRNA: 3'- -CCGacauGCA-GCCGCua-UGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 7620 | 0.66 | 0.821797 |
Target: 5'- cGCUuaccggACGUUGGCcgaaugucGAcGCCGGCGGCg -3' miRNA: 3'- cCGAca----UGCAGCCG--------CUaUGGCCGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 7002 | 0.68 | 0.668931 |
Target: 5'- cGCUcgACGUCGGCcuucagGCCGGcCAGCu -3' miRNA: 3'- cCGAcaUGCAGCCGcua---UGGCC-GUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 6851 | 0.78 | 0.207263 |
Target: 5'- cGGCUcgACGaucaggccguaguccUCGGCGAUGCCGGCcGCg -3' miRNA: 3'- -CCGAcaUGC---------------AGCCGCUAUGGCCGuUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 6575 | 0.68 | 0.711965 |
Target: 5'- cGGCgc-GCGUC-GCGAUGCCGcCGACc -3' miRNA: 3'- -CCGacaUGCAGcCGCUAUGGCcGUUG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 5177 | 0.67 | 0.763935 |
Target: 5'- cGGCcg-GCGUCgcgggcgcgGGCGcgGCCGGCGc- -3' miRNA: 3'- -CCGacaUGCAG---------CCGCuaUGGCCGUug -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 4419 | 0.7 | 0.603554 |
Target: 5'- uGCUGcGCGagcgccuggagcUCGGCGuUGCCGGCGuACu -3' miRNA: 3'- cCGACaUGC------------AGCCGCuAUGGCCGU-UG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 3681 | 0.76 | 0.265653 |
Target: 5'- cGCUGgccgugACGaCGGUGAUGCCGGCGccgACa -3' miRNA: 3'- cCGACa-----UGCaGCCGCUAUGGCCGU---UG- -5' |
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24078 | 5' | -54.4 | NC_005262.1 | + | 780 | 0.66 | 0.803185 |
Target: 5'- aGGUUcggGCGU-GGCuugACCGGCAGCa -3' miRNA: 3'- -CCGAca-UGCAgCCGcuaUGGCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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