miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 37004 0.69 0.63626
Target:  5'- -----aACGUCGGCGAgacggacAUCGGCGGCg -3'
miRNA:   3'- ccgacaUGCAGCCGCUa------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 40964 0.71 0.517987
Target:  5'- aGGCUGUcgaacaacgGCGUCGG-GuuuCUGGCGGCg -3'
miRNA:   3'- -CCGACA---------UGCAGCCgCuauGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 58831 0.7 0.571064
Target:  5'- uGGCUGcUGCGgcgcuUCGGCacgcagAUCGGCGACg -3'
miRNA:   3'- -CCGAC-AUGC-----AGCCGcua---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 32811 0.7 0.592689
Target:  5'- cGCguucgACGUCGGCcucAUGuCCGGCGACg -3'
miRNA:   3'- cCGaca--UGCAGCCGc--UAU-GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 35226 0.7 0.603554
Target:  5'- uGCgg-AgGUCGGCGGcgcgAUCGGCAGCg -3'
miRNA:   3'- cCGacaUgCAGCCGCUa---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 45233 0.7 0.603554
Target:  5'- cGGcCUGaACGccggcaacUCGGCGA--CCGGCAACc -3'
miRNA:   3'- -CC-GACaUGC--------AGCCGCUauGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 35708 0.69 0.614444
Target:  5'- cGCUccgGCGUCGGCGGga-CGGCcACg -3'
miRNA:   3'- cCGAca-UGCAGCCGCUaugGCCGuUG- -5'
24078 5' -54.4 NC_005262.1 + 58891 0.69 0.625349
Target:  5'- uGGCUGcugccGCGcUGcGCGAUcagGCCGGCGGCc -3'
miRNA:   3'- -CCGACa----UGCaGC-CGCUA---UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 21629 0.69 0.63626
Target:  5'- cGgaGUGCGaCGGCGA---CGGCGACg -3'
miRNA:   3'- cCgaCAUGCaGCCGCUaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 57060 0.71 0.507596
Target:  5'- aGGCUGaUAcCGccgagcagaUCGGCGAgAUCGGCGGCu -3'
miRNA:   3'- -CCGAC-AU-GC---------AGCCGCUaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 59335 0.72 0.465988
Target:  5'- cGGCUGaUGCGaacGCGAUcaucgcaaaguacGCCGGCAACg -3'
miRNA:   3'- -CCGAC-AUGCagcCGCUA-------------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 43842 0.74 0.382323
Target:  5'- cGGCcGcGCG-CGGCGGUgcGCCGGCAGg -3'
miRNA:   3'- -CCGaCaUGCaGCCGCUA--UGGCCGUUg -5'
24078 5' -54.4 NC_005262.1 + 6851 0.78 0.207263
Target:  5'- cGGCUcgACGaucaggccguaguccUCGGCGAUGCCGGCcGCg -3'
miRNA:   3'- -CCGAcaUGC---------------AGCCGCUAUGGCCGuUG- -5'
24078 5' -54.4 NC_005262.1 + 32879 0.77 0.233727
Target:  5'- aGCUGUucgccgcgucgaACGUCGGCcaaGCCGGCGGCg -3'
miRNA:   3'- cCGACA------------UGCAGCCGcuaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 24347 0.77 0.233727
Target:  5'- cGGCUcUGCGUCGGCGcgccugAUACCuGCAACc -3'
miRNA:   3'- -CCGAcAUGCAGCCGC------UAUGGcCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 3681 0.76 0.265653
Target:  5'- cGCUGgccgugACGaCGGUGAUGCCGGCGccgACa -3'
miRNA:   3'- cCGACa-----UGCaGCCGCUAUGGCCGU---UG- -5'
24078 5' -54.4 NC_005262.1 + 49896 0.76 0.272448
Target:  5'- cGGUcgauUGU-CGUCGGCGAcgACgGGCAGCa -3'
miRNA:   3'- -CCG----ACAuGCAGCCGCUa-UGgCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 39182 0.76 0.286454
Target:  5'- cGCUGgcaauauCGUCuGgGAUGCCGGCAACu -3'
miRNA:   3'- cCGACau-----GCAGcCgCUAUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 49848 0.75 0.339915
Target:  5'- uGGCccgGUGCcggCGGCGGUACCGGaAGCa -3'
miRNA:   3'- -CCGa--CAUGca-GCCGCUAUGGCCgUUG- -5'
24078 5' -54.4 NC_005262.1 + 49713 0.74 0.356461
Target:  5'- cGGC-GUGCcgggCGGCGA-ACCGGCGGCc -3'
miRNA:   3'- -CCGaCAUGca--GCCGCUaUGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.