miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 32169 0.66 0.812584
Target:  5'- cGCcGUAgGUCGGCu-UGCCGcGCAGg -3'
miRNA:   3'- cCGaCAUgCAGCCGcuAUGGC-CGUUg -5'
24078 5' -54.4 NC_005262.1 + 18824 0.68 0.690558
Target:  5'- uGCUGcACGUCGGCccucGCCucGGCGGCc -3'
miRNA:   3'- cCGACaUGCAGCCGcua-UGG--CCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 15108 0.68 0.668931
Target:  5'- cGGCgcgGCGUcCGGCuGGaacgcgcugGCCGGCAGCu -3'
miRNA:   3'- -CCGacaUGCA-GCCG-CUa--------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 45877 0.75 0.331853
Target:  5'- cGUUG-GCGUCGGCGccgAUCGGCGGCu -3'
miRNA:   3'- cCGACaUGCAGCCGCua-UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 30416 0.66 0.803185
Target:  5'- aGCUGggcgGCGUCGaCGAUcacgGCCGGCn-- -3'
miRNA:   3'- cCGACa---UGCAGCcGCUA----UGGCCGuug -5'
24078 5' -54.4 NC_005262.1 + 48490 0.66 0.79361
Target:  5'- cGGCcGcccgcccaUGCG-CGGCGAaucgacgACUGGCAGCa -3'
miRNA:   3'- -CCGaC--------AUGCaGCCGCUa------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 46905 0.67 0.763935
Target:  5'- gGGCgGUGCGgugUGGUGcgGCCcGGCGcGCg -3'
miRNA:   3'- -CCGaCAUGCa--GCCGCuaUGG-CCGU-UG- -5'
24078 5' -54.4 NC_005262.1 + 33709 0.67 0.753762
Target:  5'- cGGCgUGU-CGUcgcccuucuugcCGGCGucgucgucGCCGGCAGCa -3'
miRNA:   3'- -CCG-ACAuGCA------------GCCGCua------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 22103 0.68 0.722558
Target:  5'- uGGCUGcggcauagAUGcCGaugcCGGUGCCGGCGGCg -3'
miRNA:   3'- -CCGACa-------UGCaGCc---GCUAUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 34135 0.68 0.705571
Target:  5'- gGGCUGcGCGggcgcgggCGGCaugccgcucgcugccGAUGCCGGUuGCg -3'
miRNA:   3'- -CCGACaUGCa-------GCCG---------------CUAUGGCCGuUG- -5'
24078 5' -54.4 NC_005262.1 + 50912 0.68 0.711965
Target:  5'- gGGCUGaUGCGcaCGaGCGucaccGUGCaCGGCAGCg -3'
miRNA:   3'- -CCGAC-AUGCa-GC-CGC-----UAUG-GCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 12842 0.68 0.722558
Target:  5'- cGGCc-UGCGUCGGCuucagcucgGcgGCCGGCAc- -3'
miRNA:   3'- -CCGacAUGCAGCCG---------CuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 17042 0.66 0.812584
Target:  5'- cGcCUGUACGacCGGCG-UGgCGGCGAUc -3'
miRNA:   3'- cC-GACAUGCa-GCCGCuAUgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 30992 0.68 0.711965
Target:  5'- aGGCcg-ACGUCGaacGCGAUgGCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAGC---CGCUA-UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 51664 0.66 0.812584
Target:  5'- uGGCUcuccaGCG-CGGCGAUcugcucgcgcGCaCGGCGGCg -3'
miRNA:   3'- -CCGAca---UGCaGCCGCUA----------UG-GCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 33641 0.67 0.733062
Target:  5'- aGCUucGCGUCGGCauccGCCGGCGc- -3'
miRNA:   3'- cCGAcaUGCAGCCGcua-UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 41647 0.68 0.711965
Target:  5'- -----aGC-UCGGCGAUGCgGGCAGCc -3'
miRNA:   3'- ccgacaUGcAGCCGCUAUGgCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 28608 0.68 0.690558
Target:  5'- aGGCUGgccACG-CGGCGGUcgugaccucauuGCCGcCAGCg -3'
miRNA:   3'- -CCGACa--UGCaGCCGCUA------------UGGCcGUUG- -5'
24078 5' -54.4 NC_005262.1 + 12422 0.66 0.803185
Target:  5'- cGGCcuUGgccgGCGUCGcggacggcGCGGUGCCGaGCuGCa -3'
miRNA:   3'- -CCG--ACa---UGCAGC--------CGCUAUGGC-CGuUG- -5'
24078 5' -54.4 NC_005262.1 + 32737 0.66 0.783869
Target:  5'- cGGCgagcGCGUCGGCG---UCGGuCAGCa -3'
miRNA:   3'- -CCGaca-UGCAGCCGCuauGGCC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.