miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 17656 0.66 0.597862
Target:  5'- gAGAUCGCccgccagcgcgccgaGCUgGaagcggcgaagaAGCCGGCCGugGu -3'
miRNA:   3'- gUCUAGCG---------------CGAgU------------UCGGCCGGCugUu -5'
24079 3' -57.9 NC_005262.1 + 19937 0.66 0.593537
Target:  5'- -cGAUCGCGCcgaggUCcuGCCGGCCa---- -3'
miRNA:   3'- guCUAGCGCG-----AGuuCGGCCGGcuguu -5'
24079 3' -57.9 NC_005262.1 + 27252 0.66 0.593537
Target:  5'- aGGAUCGUGCgccCGAuaaucccagucGCCGcGCCGACc- -3'
miRNA:   3'- gUCUAGCGCGa--GUU-----------CGGC-CGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 17546 0.66 0.582747
Target:  5'- -cGGUCGCGCgCGAGgCGGCagccgCGGCGg -3'
miRNA:   3'- guCUAGCGCGaGUUCgGCCG-----GCUGUu -5'
24079 3' -57.9 NC_005262.1 + 27148 0.66 0.582747
Target:  5'- -uGAaUGCcUUCGAGCCGGCgGACAu -3'
miRNA:   3'- guCUaGCGcGAGUUCGGCCGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 10072 0.66 0.582747
Target:  5'- --aGUCGCGUUCGAGCgccaCGGCCuucGACGc -3'
miRNA:   3'- gucUAGCGCGAGUUCG----GCCGG---CUGUu -5'
24079 3' -57.9 NC_005262.1 + 30887 0.66 0.582747
Target:  5'- gAGcGUCGCGCgugCGAcGCCgccggcuuGGCCGACGu -3'
miRNA:   3'- gUC-UAGCGCGa--GUU-CGG--------CCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 18575 0.66 0.582747
Target:  5'- -----gGCGUUCAGGCCGaGcCCGGCGGa -3'
miRNA:   3'- gucuagCGCGAGUUCGGC-C-GGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 45382 0.66 0.578441
Target:  5'- gCAaGUCGCGCUCAuugaggcgcucggaAGCCGGUgcgggucgugcaaCGGCAu -3'
miRNA:   3'- -GUcUAGCGCGAGU--------------UCGGCCG-------------GCUGUu -5'
24079 3' -57.9 NC_005262.1 + 55332 0.66 0.571997
Target:  5'- cCAGAUCGacgaGUggaAAGCCGcGCuCGACGAg -3'
miRNA:   3'- -GUCUAGCg---CGag-UUCGGC-CG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 52198 0.66 0.571997
Target:  5'- gGGAUCGUguggaagucGCUCGagcgcuGGCCGccGCCGGCAu -3'
miRNA:   3'- gUCUAGCG---------CGAGU------UCGGC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 16029 0.66 0.56557
Target:  5'- -cGAUCGUGUUCGAgaucaucaaccGCCgcuaccgcgacuugcGGCCGACGAu -3'
miRNA:   3'- guCUAGCGCGAGUU-----------CGG---------------CCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 23433 0.66 0.561295
Target:  5'- ----cCGCGUcaUCGAGCCGuCCGACGAc -3'
miRNA:   3'- gucuaGCGCG--AGUUCGGCcGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 53507 0.66 0.561295
Target:  5'- gCAGA-CGcCGCagGGGCCGGCCcaGAUAAa -3'
miRNA:   3'- -GUCUaGC-GCGagUUCGGCCGG--CUGUU- -5'
24079 3' -57.9 NC_005262.1 + 35671 0.66 0.550649
Target:  5'- gCAGcUCGUGCUCAcGUCGaGCgGGCAc -3'
miRNA:   3'- -GUCuAGCGCGAGUuCGGC-CGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 33891 0.66 0.550649
Target:  5'- -cGAUCGUGC----GUCGGCCGGCGg -3'
miRNA:   3'- guCUAGCGCGaguuCGGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 52566 0.66 0.550649
Target:  5'- -cGAUCGuCGCugUCGAGCuCGGCgCGGCu- -3'
miRNA:   3'- guCUAGC-GCG--AGUUCG-GCCG-GCUGuu -5'
24079 3' -57.9 NC_005262.1 + 51195 0.66 0.546407
Target:  5'- gGGAgggCGCGCUCAuccgcgacgccucGCCGG-CGGCAGc -3'
miRNA:   3'- gUCUa--GCGCGAGUu------------CGGCCgGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 60174 0.67 0.544291
Target:  5'- -uGAagGCGCUCggccaguggGcggcaaccggcaaggAGCCGGCCGGCGAg -3'
miRNA:   3'- guCUagCGCGAG---------U---------------UCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 12556 0.67 0.540065
Target:  5'- gCAGGUCGCgGCggcgcucgUCGAGCUGcugcugccGCCGGCGAg -3'
miRNA:   3'- -GUCUAGCG-CG--------AGUUCGGC--------CGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.