Results 61 - 77 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 30610 | 0.7 | 0.333399 |
Target: 5'- aAGggCGCGaagaUCGAGCCGccGCCGACGc -3' miRNA: 3'- gUCuaGCGCg---AGUUCGGC--CGGCUGUu -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 5305 | 0.7 | 0.366452 |
Target: 5'- -cGGUCgagGCGgUCgGAGCUGGCCGGCAGg -3' miRNA: 3'- guCUAG---CGCgAG-UUCGGCCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 50271 | 0.71 | 0.317711 |
Target: 5'- gAGggCGCGCcCGcGCCGGCCGAg-- -3' miRNA: 3'- gUCuaGCGCGaGUuCGGCCGGCUguu -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 46804 | 0.72 | 0.24764 |
Target: 5'- gAGcgCGCGCUC-GGCCGG-CGGCAGc -3' miRNA: 3'- gUCuaGCGCGAGuUCGGCCgGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 41546 | 0.72 | 0.267213 |
Target: 5'- aCGGcgUGaUGCgCAGGCCGGCCGGCGu -3' miRNA: 3'- -GUCuaGC-GCGaGUUCGGCCGGCUGUu -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 33553 | 0.73 | 0.217669 |
Target: 5'- aCGGAaaUCGUGCUCGacgAGCUcgaGGCCGGCGAg -3' miRNA: 3'- -GUCU--AGCGCGAGU---UCGG---CCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 49560 | 0.73 | 0.21206 |
Target: 5'- gCAGGUCGCGCagAacgaGGCCgugcagaaGGCCGACAAg -3' miRNA: 3'- -GUCUAGCGCGagU----UCGG--------CCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 40914 | 0.74 | 0.195975 |
Target: 5'- aGGAUCGUGCUCu-GCCGGCuCGAa-- -3' miRNA: 3'- gUCUAGCGCGAGuuCGGCCG-GCUguu -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 49947 | 0.74 | 0.206576 |
Target: 5'- cCGGAUgGCGUgacguUCGAGCCGaucGCCGACGAg -3' miRNA: 3'- -GUCUAgCGCG-----AGUUCGGC---CGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 57476 | 0.75 | 0.15398 |
Target: 5'- gAGGUCGaggGCgagAAGCCGGCCGACGAg -3' miRNA: 3'- gUCUAGCg--CGag-UUCGGCCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 10996 | 0.75 | 0.166986 |
Target: 5'- -cGGUCGCGCUC--GCaCGGCUGACGAg -3' miRNA: 3'- guCUAGCGCGAGuuCG-GCCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 5974 | 0.75 | 0.171535 |
Target: 5'- gGGGUCG-GCUUuuGCCGGCCGGCu- -3' miRNA: 3'- gUCUAGCgCGAGuuCGGCCGGCUGuu -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 8214 | 0.77 | 0.120308 |
Target: 5'- aCAGGuccaUCGCGCgcugCGAGCCGGCCGGg-- -3' miRNA: 3'- -GUCU----AGCGCGa---GUUCGGCCGGCUguu -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 11655 | 0.78 | 0.104691 |
Target: 5'- cCGGcGUCGCGCUgCAcGCUGGCCGGCAGa -3' miRNA: 3'- -GUC-UAGCGCGA-GUuCGGCCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 50821 | 0.78 | 0.104691 |
Target: 5'- gCGGGUCGCGgUCGucgacgccgAGCCGGUCGGCGAu -3' miRNA: 3'- -GUCUAGCGCgAGU---------UCGGCCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 51114 | 0.83 | 0.045876 |
Target: 5'- -cGAUCGUGCUCGAcgcGCCGGUCGACAAg -3' miRNA: 3'- guCUAGCGCGAGUU---CGGCCGGCUGUU- -5' |
|||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 53864 | 1.06 | 0.00098 |
Target: 5'- gCAGAUCGCGCUCAAGCCGGCCGACAAg -3' miRNA: 3'- -GUCUAGCGCGAGUUCGGCCGGCUGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home