Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 42737 | 0.69 | 0.37506 |
Target: 5'- --cGUCGCGCUCGGcGCCuacGGCaCGACGAu -3' miRNA: 3'- gucUAGCGCGAGUU-CGG---CCG-GCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 17140 | 0.69 | 0.37506 |
Target: 5'- aAGAaCGCGCgcgucgcaaUCGAGaaGGCCGGCAAg -3' miRNA: 3'- gUCUaGCGCG---------AGUUCggCCGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 31047 | 0.69 | 0.383804 |
Target: 5'- uCAGcaccgCGuCGCUCAcggaguGGUCGGCCGGCAGc -3' miRNA: 3'- -GUCua---GC-GCGAGU------UCGGCCGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 15742 | 0.69 | 0.383804 |
Target: 5'- gCAGGUgcgaccgaCGCGCUugCGGGCgCGGCCGGCu- -3' miRNA: 3'- -GUCUA--------GCGCGA--GUUCG-GCCGGCUGuu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 55639 | 0.69 | 0.383804 |
Target: 5'- cCGGGccgCGCGCUCGuGGCCGcGuCCGGCAc -3' miRNA: 3'- -GUCUa--GCGCGAGU-UCGGC-C-GGCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 40447 | 0.69 | 0.383804 |
Target: 5'- ----gCGCGCuUCAcGCCGGCCGugGu -3' miRNA: 3'- gucuaGCGCG-AGUuCGGCCGGCugUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 44778 | 0.69 | 0.392683 |
Target: 5'- cCAGcgCGCGg-CAGGCCGaGCuCGACGAg -3' miRNA: 3'- -GUCuaGCGCgaGUUCGGC-CG-GCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 21867 | 0.69 | 0.392683 |
Target: 5'- gGGAUCgGCGCUgAAGCCGaCCGcGCAGc -3' miRNA: 3'- gUCUAG-CGCGAgUUCGGCcGGC-UGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 6274 | 0.69 | 0.392683 |
Target: 5'- -uGAUCGCGgUCGAuGcCCGGCgCGACGc -3' miRNA: 3'- guCUAGCGCgAGUU-C-GGCCG-GCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 36472 | 0.69 | 0.392683 |
Target: 5'- gGGcgCGCGCg-AGGCUGGCgGACAu -3' miRNA: 3'- gUCuaGCGCGagUUCGGCCGgCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 48014 | 0.69 | 0.400786 |
Target: 5'- gGGGUUGcCGC-CGAagaugaggaagucGCCGGCCGGCAGg -3' miRNA: 3'- gUCUAGC-GCGaGUU-------------CGGCCGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 25733 | 0.69 | 0.401693 |
Target: 5'- aAGAUCGCGC-CAgcGGCCGuGCCGuuCGu -3' miRNA: 3'- gUCUAGCGCGaGU--UCGGC-CGGCu-GUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 23337 | 0.69 | 0.401693 |
Target: 5'- -cGAgcaCGCGCUCGAcCaCGGCCGGCGu -3' miRNA: 3'- guCUa--GCGCGAGUUcG-GCCGGCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 12249 | 0.69 | 0.410835 |
Target: 5'- -cGGUCGCGUcgauggUCGGGCaccugucgaucgCGGCCGGCGAg -3' miRNA: 3'- guCUAGCGCG------AGUUCG------------GCCGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 43817 | 0.68 | 0.429498 |
Target: 5'- -cGAUCGCgGCgacacggccgCGGGCCGGCCGcGCGc -3' miRNA: 3'- guCUAGCG-CGa---------GUUCGGCCGGC-UGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 38804 | 0.68 | 0.429498 |
Target: 5'- cCAGAcCGCGCUCGAauGCCGccucgaccaaGCCGGCc- -3' miRNA: 3'- -GUCUaGCGCGAGUU--CGGC----------CGGCUGuu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 18475 | 0.68 | 0.438058 |
Target: 5'- gCAGAccuugcaUCGCGC-CGuuguAGCCuuGGCCGACGAu -3' miRNA: 3'- -GUCU-------AGCGCGaGU----UCGG--CCGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 5180 | 0.68 | 0.439015 |
Target: 5'- cCGGcGUCGCGggcgCGGGCgCGGCCGGCGc -3' miRNA: 3'- -GUC-UAGCGCga--GUUCG-GCCGGCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 57024 | 0.68 | 0.439015 |
Target: 5'- -cGAUCuucaacCGCUUcaagGAGCUGGCCGGCAAg -3' miRNA: 3'- guCUAGc-----GCGAG----UUCGGCCGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 23924 | 0.68 | 0.448651 |
Target: 5'- --uGUUGCGCUCGAGCuCGGCCu---- -3' miRNA: 3'- gucUAGCGCGAGUUCG-GCCGGcuguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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