miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 43879 0.67 0.540065
Target:  5'- -cGAUCGCGCgCA---UGGCCGACAu -3'
miRNA:   3'- guCUAGCGCGaGUucgGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 46750 0.67 0.540065
Target:  5'- -cGAUCGcCGC-CAcGCCGGUCGuACAGg -3'
miRNA:   3'- guCUAGC-GCGaGUuCGGCCGGC-UGUU- -5'
24079 3' -57.9 NC_005262.1 + 19120 0.67 0.540065
Target:  5'- uCGGAUCGgGCgCGGGCgCGucGCCGGCGu -3'
miRNA:   3'- -GUCUAGCgCGaGUUCG-GC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 38818 0.67 0.533748
Target:  5'- aCGGAUacgcugaccgucucgCGUGCUCAGGaaGGCaCGGCAGc -3'
miRNA:   3'- -GUCUA---------------GCGCGAGUUCggCCG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 32680 0.67 0.529551
Target:  5'- gAGuUCGCGCU---GCCGGCCGcCGg -3'
miRNA:   3'- gUCuAGCGCGAguuCGGCCGGCuGUu -5'
24079 3' -57.9 NC_005262.1 + 57401 0.67 0.529551
Target:  5'- gAGAUCGaGCUgAccgccgagaAGgCGGCCGACAAc -3'
miRNA:   3'- gUCUAGCgCGAgU---------UCgGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 58705 0.67 0.529551
Target:  5'- cCGGG-CGCGCaccgcCGAGCCGGUCGcACGc -3'
miRNA:   3'- -GUCUaGCGCGa----GUUCGGCCGGC-UGUu -5'
24079 3' -57.9 NC_005262.1 + 18527 0.67 0.529551
Target:  5'- gCGGAaguUCGCGUUCGAcgcuccgagguuGCCGGUCGcCGAg -3'
miRNA:   3'- -GUCU---AGCGCGAGUU------------CGGCCGGCuGUU- -5'
24079 3' -57.9 NC_005262.1 + 22209 0.67 0.526412
Target:  5'- cCGGGcUCGCGCUCGacaagcucacggccGcgccgcccacGCCGGCCGGCc- -3'
miRNA:   3'- -GUCU-AGCGCGAGU--------------U----------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 2970 0.67 0.508757
Target:  5'- -cGAUCGCGU--AGGCCGGCgcaaacucugCGACAGc -3'
miRNA:   3'- guCUAGCGCGagUUCGGCCG----------GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 117 0.67 0.508757
Target:  5'- aCGGAUUGCG-UCGucGCCGucGCCGGCAAu -3'
miRNA:   3'- -GUCUAGCGCgAGUu-CGGC--CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 19652 0.67 0.508757
Target:  5'- -cGAUCGCGCgCGcGuCCGGCCGGa-- -3'
miRNA:   3'- guCUAGCGCGaGUuC-GGCCGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 28234 0.67 0.488316
Target:  5'- ---uUCGCGCUCuuucCCGcGCCGGCGAg -3'
miRNA:   3'- gucuAGCGCGAGuuc-GGC-CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 45058 0.67 0.488316
Target:  5'- -cGA-CGCGC-CGAGCCGcGCCGAa-- -3'
miRNA:   3'- guCUaGCGCGaGUUCGGC-CGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 29028 0.68 0.47824
Target:  5'- -cGAUcCGCcgaGCUCGAGCgGcGCCGGCAc -3'
miRNA:   3'- guCUA-GCG---CGAGUUCGgC-CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 11169 0.68 0.462336
Target:  5'- -cGGUCGCGCgccaCGAGCCGGugcgcuucagcucgcCCGGCu- -3'
miRNA:   3'- guCUAGCGCGa---GUUCGGCC---------------GGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 17362 0.68 0.458404
Target:  5'- aAGAUCGaCGCgaUCAAgaaccuGCCGGUCGACu- -3'
miRNA:   3'- gUCUAGC-GCG--AGUU------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 23924 0.68 0.448651
Target:  5'- --uGUUGCGCUCGAGCuCGGCCu---- -3'
miRNA:   3'- gucUAGCGCGAGUUCG-GCCGGcuguu -5'
24079 3' -57.9 NC_005262.1 + 5180 0.68 0.439015
Target:  5'- cCGGcGUCGCGggcgCGGGCgCGGCCGGCGc -3'
miRNA:   3'- -GUC-UAGCGCga--GUUCG-GCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 57024 0.68 0.439015
Target:  5'- -cGAUCuucaacCGCUUcaagGAGCUGGCCGGCAAg -3'
miRNA:   3'- guCUAGc-----GCGAG----UUCGGCCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.