miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 117 0.67 0.508757
Target:  5'- aCGGAUUGCG-UCGucGCCGucGCCGGCAAu -3'
miRNA:   3'- -GUCUAGCGCgAGUu-CGGC--CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 2970 0.67 0.508757
Target:  5'- -cGAUCGCGU--AGGCCGGCgcaaacucugCGACAGc -3'
miRNA:   3'- guCUAGCGCGagUUCGGCCG----------GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 5180 0.68 0.439015
Target:  5'- cCGGcGUCGCGggcgCGGGCgCGGCCGGCGc -3'
miRNA:   3'- -GUC-UAGCGCga--GUUCG-GCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 5305 0.7 0.366452
Target:  5'- -cGGUCgagGCGgUCgGAGCUGGCCGGCAGg -3'
miRNA:   3'- guCUAG---CGCgAG-UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 5974 0.75 0.171535
Target:  5'- gGGGUCG-GCUUuuGCCGGCCGGCu- -3'
miRNA:   3'- gUCUAGCgCGAGuuCGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 6274 0.69 0.392683
Target:  5'- -uGAUCGCGgUCGAuGcCCGGCgCGACGc -3'
miRNA:   3'- guCUAGCGCgAGUU-C-GGCCG-GCUGUu -5'
24079 3' -57.9 NC_005262.1 + 8214 0.77 0.120308
Target:  5'- aCAGGuccaUCGCGCgcugCGAGCCGGCCGGg-- -3'
miRNA:   3'- -GUCU----AGCGCGa---GUUCGGCCGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 10072 0.66 0.582747
Target:  5'- --aGUCGCGUUCGAGCgccaCGGCCuucGACGc -3'
miRNA:   3'- gucUAGCGCGAGUUCG----GCCGG---CUGUu -5'
24079 3' -57.9 NC_005262.1 + 10996 0.75 0.166986
Target:  5'- -cGGUCGCGCUC--GCaCGGCUGACGAg -3'
miRNA:   3'- guCUAGCGCGAGuuCG-GCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 11169 0.68 0.462336
Target:  5'- -cGGUCGCGCgccaCGAGCCGGugcgcuucagcucgcCCGGCu- -3'
miRNA:   3'- guCUAGCGCGa---GUUCGGCC---------------GGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 11655 0.78 0.104691
Target:  5'- cCGGcGUCGCGCUgCAcGCUGGCCGGCAGa -3'
miRNA:   3'- -GUC-UAGCGCGA-GUuCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 12249 0.69 0.410835
Target:  5'- -cGGUCGCGUcgauggUCGGGCaccugucgaucgCGGCCGGCGAg -3'
miRNA:   3'- guCUAGCGCG------AGUUCG------------GCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 12556 0.67 0.540065
Target:  5'- gCAGGUCGCgGCggcgcucgUCGAGCUGcugcugccGCCGGCGAg -3'
miRNA:   3'- -GUCUAGCG-CG--------AGUUCGGC--------CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 15742 0.69 0.383804
Target:  5'- gCAGGUgcgaccgaCGCGCUugCGGGCgCGGCCGGCu- -3'
miRNA:   3'- -GUCUA--------GCGCGA--GUUCG-GCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 16029 0.66 0.56557
Target:  5'- -cGAUCGUGUUCGAgaucaucaaccGCCgcuaccgcgacuugcGGCCGACGAu -3'
miRNA:   3'- guCUAGCGCGAGUU-----------CGG---------------CCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 17140 0.69 0.37506
Target:  5'- aAGAaCGCGCgcgucgcaaUCGAGaaGGCCGGCAAg -3'
miRNA:   3'- gUCUaGCGCG---------AGUUCggCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 17362 0.68 0.458404
Target:  5'- aAGAUCGaCGCgaUCAAgaaccuGCCGGUCGACu- -3'
miRNA:   3'- gUCUAGC-GCG--AGUU------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 17546 0.66 0.582747
Target:  5'- -cGGUCGCGCgCGAGgCGGCagccgCGGCGg -3'
miRNA:   3'- guCUAGCGCGaGUUCgGCCG-----GCUGUu -5'
24079 3' -57.9 NC_005262.1 + 17656 0.66 0.597862
Target:  5'- gAGAUCGCccgccagcgcgccgaGCUgGaagcggcgaagaAGCCGGCCGugGu -3'
miRNA:   3'- gUCUAGCG---------------CGAgU------------UCGGCCGGCugUu -5'
24079 3' -57.9 NC_005262.1 + 18475 0.68 0.438058
Target:  5'- gCAGAccuugcaUCGCGC-CGuuguAGCCuuGGCCGACGAu -3'
miRNA:   3'- -GUCU-------AGCGCGaGU----UCGG--CCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.