miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 18527 0.67 0.529551
Target:  5'- gCGGAaguUCGCGUUCGAcgcuccgagguuGCCGGUCGcCGAg -3'
miRNA:   3'- -GUCU---AGCGCGAGUU------------CGGCCGGCuGUU- -5'
24079 3' -57.9 NC_005262.1 + 18575 0.66 0.582747
Target:  5'- -----gGCGUUCAGGCCGaGcCCGGCGGa -3'
miRNA:   3'- gucuagCGCGAGUUCGGC-C-GGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 19120 0.67 0.540065
Target:  5'- uCGGAUCGgGCgCGGGCgCGucGCCGGCGu -3'
miRNA:   3'- -GUCUAGCgCGaGUUCG-GC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 19652 0.67 0.508757
Target:  5'- -cGAUCGCGCgCGcGuCCGGCCGGa-- -3'
miRNA:   3'- guCUAGCGCGaGUuC-GGCCGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 19937 0.66 0.593537
Target:  5'- -cGAUCGCGCcgaggUCcuGCCGGCCa---- -3'
miRNA:   3'- guCUAGCGCG-----AGuuCGGCCGGcuguu -5'
24079 3' -57.9 NC_005262.1 + 21713 0.69 0.37506
Target:  5'- gUAGAUCGU-CUCGAuCUGGCCGGCGGg -3'
miRNA:   3'- -GUCUAGCGcGAGUUcGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 21867 0.69 0.392683
Target:  5'- gGGAUCgGCGCUgAAGCCGaCCGcGCAGc -3'
miRNA:   3'- gUCUAG-CGCGAgUUCGGCcGGC-UGUU- -5'
24079 3' -57.9 NC_005262.1 + 22209 0.67 0.526412
Target:  5'- cCGGGcUCGCGCUCGacaagcucacggccGcgccgcccacGCCGGCCGGCc- -3'
miRNA:   3'- -GUCU-AGCGCGAGU--------------U----------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 23337 0.69 0.401693
Target:  5'- -cGAgcaCGCGCUCGAcCaCGGCCGGCGu -3'
miRNA:   3'- guCUa--GCGCGAGUUcG-GCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 23433 0.66 0.561295
Target:  5'- ----cCGCGUcaUCGAGCCGuCCGACGAc -3'
miRNA:   3'- gucuaGCGCG--AGUUCGGCcGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 23924 0.68 0.448651
Target:  5'- --uGUUGCGCUCGAGCuCGGCCu---- -3'
miRNA:   3'- gucUAGCGCGAGUUCG-GCCGGcuguu -5'
24079 3' -57.9 NC_005262.1 + 25733 0.69 0.401693
Target:  5'- aAGAUCGCGC-CAgcGGCCGuGCCGuuCGu -3'
miRNA:   3'- gUCUAGCGCGaGU--UCGGC-CGGCu-GUu -5'
24079 3' -57.9 NC_005262.1 + 27148 0.66 0.582747
Target:  5'- -uGAaUGCcUUCGAGCCGGCgGACAu -3'
miRNA:   3'- guCUaGCGcGAGUUCGGCCGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 27252 0.66 0.593537
Target:  5'- aGGAUCGUGCgccCGAuaaucccagucGCCGcGCCGACc- -3'
miRNA:   3'- gUCUAGCGCGa--GUU-----------CGGC-CGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 27642 0.69 0.37506
Target:  5'- -cGAUC-UGCUCGAGCUGGUCGAUc- -3'
miRNA:   3'- guCUAGcGCGAGUUCGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 28234 0.67 0.488316
Target:  5'- ---uUCGCGCUCuuucCCGcGCCGGCGAg -3'
miRNA:   3'- gucuAGCGCGAGuuc-GGC-CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 29028 0.68 0.47824
Target:  5'- -cGAUcCGCcgaGCUCGAGCgGcGCCGGCAc -3'
miRNA:   3'- guCUA-GCG---CGAGUUCGgC-CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 29902 0.7 0.349647
Target:  5'- -cGAUCGgGCc---GCCGGCCGACGc -3'
miRNA:   3'- guCUAGCgCGaguuCGGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 30610 0.7 0.333399
Target:  5'- aAGggCGCGaagaUCGAGCCGccGCCGACGc -3'
miRNA:   3'- gUCuaGCGCg---AGUUCGGC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 30887 0.66 0.582747
Target:  5'- gAGcGUCGCGCgugCGAcGCCgccggcuuGGCCGACGu -3'
miRNA:   3'- gUC-UAGCGCGa--GUU-CGG--------CCGGCUGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.