miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 31047 0.69 0.383804
Target:  5'- uCAGcaccgCGuCGCUCAcggaguGGUCGGCCGGCAGc -3'
miRNA:   3'- -GUCua---GC-GCGAGU------UCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 32680 0.67 0.529551
Target:  5'- gAGuUCGCGCU---GCCGGCCGcCGg -3'
miRNA:   3'- gUCuAGCGCGAguuCGGCCGGCuGUu -5'
24079 3' -57.9 NC_005262.1 + 33553 0.73 0.217669
Target:  5'- aCGGAaaUCGUGCUCGacgAGCUcgaGGCCGGCGAg -3'
miRNA:   3'- -GUCU--AGCGCGAGU---UCGG---CCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 33891 0.66 0.550649
Target:  5'- -cGAUCGUGC----GUCGGCCGGCGg -3'
miRNA:   3'- guCUAGCGCGaguuCGGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 35671 0.66 0.550649
Target:  5'- gCAGcUCGUGCUCAcGUCGaGCgGGCAc -3'
miRNA:   3'- -GUCuAGCGCGAGUuCGGC-CGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 36472 0.69 0.392683
Target:  5'- gGGcgCGCGCg-AGGCUGGCgGACAu -3'
miRNA:   3'- gUCuaGCGCGagUUCGGCCGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 38804 0.68 0.429498
Target:  5'- cCAGAcCGCGCUCGAauGCCGccucgaccaaGCCGGCc- -3'
miRNA:   3'- -GUCUaGCGCGAGUU--CGGC----------CGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 38818 0.67 0.533748
Target:  5'- aCGGAUacgcugaccgucucgCGUGCUCAGGaaGGCaCGGCAGc -3'
miRNA:   3'- -GUCUA---------------GCGCGAGUUCggCCG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 40447 0.69 0.383804
Target:  5'- ----gCGCGCuUCAcGCCGGCCGugGu -3'
miRNA:   3'- gucuaGCGCG-AGUuCGGCCGGCugUu -5'
24079 3' -57.9 NC_005262.1 + 40914 0.74 0.195975
Target:  5'- aGGAUCGUGCUCu-GCCGGCuCGAa-- -3'
miRNA:   3'- gUCUAGCGCGAGuuCGGCCG-GCUguu -5'
24079 3' -57.9 NC_005262.1 + 41546 0.72 0.267213
Target:  5'- aCGGcgUGaUGCgCAGGCCGGCCGGCGu -3'
miRNA:   3'- -GUCuaGC-GCGaGUUCGGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 42737 0.69 0.37506
Target:  5'- --cGUCGCGCUCGGcGCCuacGGCaCGACGAu -3'
miRNA:   3'- gucUAGCGCGAGUU-CGG---CCG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 43817 0.68 0.429498
Target:  5'- -cGAUCGCgGCgacacggccgCGGGCCGGCCGcGCGc -3'
miRNA:   3'- guCUAGCG-CGa---------GUUCGGCCGGC-UGUu -5'
24079 3' -57.9 NC_005262.1 + 43879 0.67 0.540065
Target:  5'- -cGAUCGCGCgCA---UGGCCGACAu -3'
miRNA:   3'- guCUAGCGCGaGUucgGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 44778 0.69 0.392683
Target:  5'- cCAGcgCGCGg-CAGGCCGaGCuCGACGAg -3'
miRNA:   3'- -GUCuaGCGCgaGUUCGGC-CG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 45058 0.67 0.488316
Target:  5'- -cGA-CGCGC-CGAGCCGcGCCGAa-- -3'
miRNA:   3'- guCUaGCGCGaGUUCGGC-CGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 45382 0.66 0.578441
Target:  5'- gCAaGUCGCGCUCAuugaggcgcucggaAGCCGGUgcgggucgugcaaCGGCAu -3'
miRNA:   3'- -GUcUAGCGCGAGU--------------UCGGCCG-------------GCUGUu -5'
24079 3' -57.9 NC_005262.1 + 46750 0.67 0.540065
Target:  5'- -cGAUCGcCGC-CAcGCCGGUCGuACAGg -3'
miRNA:   3'- guCUAGC-GCGaGUuCGGCCGGC-UGUU- -5'
24079 3' -57.9 NC_005262.1 + 46804 0.72 0.24764
Target:  5'- gAGcgCGCGCUC-GGCCGG-CGGCAGc -3'
miRNA:   3'- gUCuaGCGCGAGuUCGGCCgGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 48014 0.69 0.400786
Target:  5'- gGGGUUGcCGC-CGAagaugaggaagucGCCGGCCGGCAGg -3'
miRNA:   3'- gUCUAGC-GCGaGUU-------------CGGCCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.