miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 49560 0.73 0.21206
Target:  5'- gCAGGUCGCGCagAacgaGGCCgugcagaaGGCCGACAAg -3'
miRNA:   3'- -GUCUAGCGCGagU----UCGG--------CCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 49947 0.74 0.206576
Target:  5'- cCGGAUgGCGUgacguUCGAGCCGaucGCCGACGAg -3'
miRNA:   3'- -GUCUAgCGCG-----AGUUCGGC---CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 50271 0.71 0.317711
Target:  5'- gAGggCGCGCcCGcGCCGGCCGAg-- -3'
miRNA:   3'- gUCuaGCGCGaGUuCGGCCGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 50821 0.78 0.104691
Target:  5'- gCGGGUCGCGgUCGucgacgccgAGCCGGUCGGCGAu -3'
miRNA:   3'- -GUCUAGCGCgAGU---------UCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 51114 0.83 0.045876
Target:  5'- -cGAUCGUGCUCGAcgcGCCGGUCGACAAg -3'
miRNA:   3'- guCUAGCGCGAGUU---CGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 51195 0.66 0.546407
Target:  5'- gGGAgggCGCGCUCAuccgcgacgccucGCCGG-CGGCAGc -3'
miRNA:   3'- gUCUa--GCGCGAGUu------------CGGCCgGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 52198 0.66 0.571997
Target:  5'- gGGAUCGUguggaagucGCUCGagcgcuGGCCGccGCCGGCAu -3'
miRNA:   3'- gUCUAGCG---------CGAGU------UCGGC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 52566 0.66 0.550649
Target:  5'- -cGAUCGuCGCugUCGAGCuCGGCgCGGCu- -3'
miRNA:   3'- guCUAGC-GCG--AGUUCG-GCCG-GCUGuu -5'
24079 3' -57.9 NC_005262.1 + 53507 0.66 0.561295
Target:  5'- gCAGA-CGcCGCagGGGCCGGCCcaGAUAAa -3'
miRNA:   3'- -GUCUaGC-GCGagUUCGGCCGG--CUGUU- -5'
24079 3' -57.9 NC_005262.1 + 53864 1.06 0.00098
Target:  5'- gCAGAUCGCGCUCAAGCCGGCCGACAAg -3'
miRNA:   3'- -GUCUAGCGCGAGUUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 55332 0.66 0.571997
Target:  5'- cCAGAUCGacgaGUggaAAGCCGcGCuCGACGAg -3'
miRNA:   3'- -GUCUAGCg---CGag-UUCGGC-CG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 55639 0.69 0.383804
Target:  5'- cCGGGccgCGCGCUCGuGGCCGcGuCCGGCAc -3'
miRNA:   3'- -GUCUa--GCGCGAGU-UCGGC-C-GGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 57024 0.68 0.439015
Target:  5'- -cGAUCuucaacCGCUUcaagGAGCUGGCCGGCAAg -3'
miRNA:   3'- guCUAGc-----GCGAG----UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 57401 0.67 0.529551
Target:  5'- gAGAUCGaGCUgAccgccgagaAGgCGGCCGACAAc -3'
miRNA:   3'- gUCUAGCgCGAgU---------UCgGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 57476 0.75 0.15398
Target:  5'- gAGGUCGaggGCgagAAGCCGGCCGACGAg -3'
miRNA:   3'- gUCUAGCg--CGag-UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 58705 0.67 0.529551
Target:  5'- cCGGG-CGCGCaccgcCGAGCCGGUCGcACGc -3'
miRNA:   3'- -GUCUaGCGCGa----GUUCGGCCGGC-UGUu -5'
24079 3' -57.9 NC_005262.1 + 60174 0.67 0.544291
Target:  5'- -uGAagGCGCUCggccaguggGcggcaaccggcaaggAGCCGGCCGGCGAg -3'
miRNA:   3'- guCUagCGCGAG---------U---------------UCGGCCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.