miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 43817 0.68 0.429498
Target:  5'- -cGAUCGCgGCgacacggccgCGGGCCGGCCGcGCGc -3'
miRNA:   3'- guCUAGCG-CGa---------GUUCGGCCGGC-UGUu -5'
24079 3' -57.9 NC_005262.1 + 17140 0.69 0.37506
Target:  5'- aAGAaCGCGCgcgucgcaaUCGAGaaGGCCGGCAAg -3'
miRNA:   3'- gUCUaGCGCG---------AGUUCggCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 42737 0.69 0.37506
Target:  5'- --cGUCGCGCUCGGcGCCuacGGCaCGACGAu -3'
miRNA:   3'- gucUAGCGCGAGUU-CGG---CCG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 55639 0.69 0.383804
Target:  5'- cCGGGccgCGCGCUCGuGGCCGcGuCCGGCAc -3'
miRNA:   3'- -GUCUa--GCGCGAGU-UCGGC-C-GGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 21867 0.69 0.392683
Target:  5'- gGGAUCgGCGCUgAAGCCGaCCGcGCAGc -3'
miRNA:   3'- gUCUAG-CGCGAgUUCGGCcGGC-UGUU- -5'
24079 3' -57.9 NC_005262.1 + 36472 0.69 0.392683
Target:  5'- gGGcgCGCGCg-AGGCUGGCgGACAu -3'
miRNA:   3'- gUCuaGCGCGagUUCGGCCGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 44778 0.69 0.392683
Target:  5'- cCAGcgCGCGg-CAGGCCGaGCuCGACGAg -3'
miRNA:   3'- -GUCuaGCGCgaGUUCGGC-CG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 23337 0.69 0.401693
Target:  5'- -cGAgcaCGCGCUCGAcCaCGGCCGGCGu -3'
miRNA:   3'- guCUa--GCGCGAGUUcG-GCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 12249 0.69 0.410835
Target:  5'- -cGGUCGCGUcgauggUCGGGCaccugucgaucgCGGCCGGCGAg -3'
miRNA:   3'- guCUAGCGCG------AGUUCG------------GCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 5305 0.7 0.366452
Target:  5'- -cGGUCgagGCGgUCgGAGCUGGCCGGCAGg -3'
miRNA:   3'- guCUAG---CGCgAG-UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 30610 0.7 0.333399
Target:  5'- aAGggCGCGaagaUCGAGCCGccGCCGACGc -3'
miRNA:   3'- gUCuaGCGCg---AGUUCGGC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 50271 0.71 0.317711
Target:  5'- gAGggCGCGCcCGcGCCGGCCGAg-- -3'
miRNA:   3'- gUCuaGCGCGaGUuCGGCCGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 51114 0.83 0.045876
Target:  5'- -cGAUCGUGCUCGAcgcGCCGGUCGACAAg -3'
miRNA:   3'- guCUAGCGCGAGUU---CGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 11655 0.78 0.104691
Target:  5'- cCGGcGUCGCGCUgCAcGCUGGCCGGCAGa -3'
miRNA:   3'- -GUC-UAGCGCGA-GUuCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 57476 0.75 0.15398
Target:  5'- gAGGUCGaggGCgagAAGCCGGCCGACGAg -3'
miRNA:   3'- gUCUAGCg--CGag-UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 10996 0.75 0.166986
Target:  5'- -cGGUCGCGCUC--GCaCGGCUGACGAg -3'
miRNA:   3'- guCUAGCGCGAGuuCG-GCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 5974 0.75 0.171535
Target:  5'- gGGGUCG-GCUUuuGCCGGCCGGCu- -3'
miRNA:   3'- gUCUAGCgCGAGuuCGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 49947 0.74 0.206576
Target:  5'- cCGGAUgGCGUgacguUCGAGCCGaucGCCGACGAg -3'
miRNA:   3'- -GUCUAgCGCG-----AGUUCGGC---CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 49560 0.73 0.21206
Target:  5'- gCAGGUCGCGCagAacgaGGCCgugcagaaGGCCGACAAg -3'
miRNA:   3'- -GUCUAGCGCGagU----UCGG--------CCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 33553 0.73 0.217669
Target:  5'- aCGGAaaUCGUGCUCGacgAGCUcgaGGCCGGCGAg -3'
miRNA:   3'- -GUCU--AGCGCGAGU---UCGG---CCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.