Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24079 | 3' | -57.9 | NC_005262.1 | + | 19937 | 0.66 | 0.593537 |
Target: 5'- -cGAUCGCGCcgaggUCcuGCCGGCCa---- -3' miRNA: 3'- guCUAGCGCG-----AGuuCGGCCGGcuguu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 27148 | 0.66 | 0.582747 |
Target: 5'- -uGAaUGCcUUCGAGCCGGCgGACAu -3' miRNA: 3'- guCUaGCGcGAGUUCGGCCGgCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 10072 | 0.66 | 0.582747 |
Target: 5'- --aGUCGCGUUCGAGCgccaCGGCCuucGACGc -3' miRNA: 3'- gucUAGCGCGAGUUCG----GCCGG---CUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 30887 | 0.66 | 0.582747 |
Target: 5'- gAGcGUCGCGCgugCGAcGCCgccggcuuGGCCGACGu -3' miRNA: 3'- gUC-UAGCGCGa--GUU-CGG--------CCGGCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 18575 | 0.66 | 0.582747 |
Target: 5'- -----gGCGUUCAGGCCGaGcCCGGCGGa -3' miRNA: 3'- gucuagCGCGAGUUCGGC-C-GGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 45382 | 0.66 | 0.578441 |
Target: 5'- gCAaGUCGCGCUCAuugaggcgcucggaAGCCGGUgcgggucgugcaaCGGCAu -3' miRNA: 3'- -GUcUAGCGCGAGU--------------UCGGCCG-------------GCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 52198 | 0.66 | 0.571997 |
Target: 5'- gGGAUCGUguggaagucGCUCGagcgcuGGCCGccGCCGGCAu -3' miRNA: 3'- gUCUAGCG---------CGAGU------UCGGC--CGGCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 52566 | 0.66 | 0.550649 |
Target: 5'- -cGAUCGuCGCugUCGAGCuCGGCgCGGCu- -3' miRNA: 3'- guCUAGC-GCG--AGUUCG-GCCG-GCUGuu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 51195 | 0.66 | 0.546407 |
Target: 5'- gGGAgggCGCGCUCAuccgcgacgccucGCCGG-CGGCAGc -3' miRNA: 3'- gUCUa--GCGCGAGUu------------CGGCCgGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 19120 | 0.67 | 0.540065 |
Target: 5'- uCGGAUCGgGCgCGGGCgCGucGCCGGCGu -3' miRNA: 3'- -GUCUAGCgCGaGUUCG-GC--CGGCUGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 58705 | 0.67 | 0.529551 |
Target: 5'- cCGGG-CGCGCaccgcCGAGCCGGUCGcACGc -3' miRNA: 3'- -GUCUaGCGCGa----GUUCGGCCGGC-UGUu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 18527 | 0.67 | 0.529551 |
Target: 5'- gCGGAaguUCGCGUUCGAcgcuccgagguuGCCGGUCGcCGAg -3' miRNA: 3'- -GUCU---AGCGCGAGUU------------CGGCCGGCuGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 19652 | 0.67 | 0.508757 |
Target: 5'- -cGAUCGCGCgCGcGuCCGGCCGGa-- -3' miRNA: 3'- guCUAGCGCGaGUuC-GGCCGGCUguu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 117 | 0.67 | 0.508757 |
Target: 5'- aCGGAUUGCG-UCGucGCCGucGCCGGCAAu -3' miRNA: 3'- -GUCUAGCGCgAGUu-CGGC--CGGCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 2970 | 0.67 | 0.508757 |
Target: 5'- -cGAUCGCGU--AGGCCGGCgcaaacucugCGACAGc -3' miRNA: 3'- guCUAGCGCGagUUCGGCCG----------GCUGUU- -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 45058 | 0.67 | 0.488316 |
Target: 5'- -cGA-CGCGC-CGAGCCGcGCCGAa-- -3' miRNA: 3'- guCUaGCGCGaGUUCGGC-CGGCUguu -5' |
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24079 | 3' | -57.9 | NC_005262.1 | + | 27252 | 0.66 | 0.593537 |
Target: 5'- aGGAUCGUGCgccCGAuaaucccagucGCCGcGCCGACc- -3' miRNA: 3'- gUCUAGCGCGa--GUU-----------CGGC-CGGCUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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