miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 58705 0.67 0.529551
Target:  5'- cCGGG-CGCGCaccgcCGAGCCGGUCGcACGc -3'
miRNA:   3'- -GUCUaGCGCGa----GUUCGGCCGGC-UGUu -5'
24079 3' -57.9 NC_005262.1 + 30887 0.66 0.582747
Target:  5'- gAGcGUCGCGCgugCGAcGCCgccggcuuGGCCGACGu -3'
miRNA:   3'- gUC-UAGCGCGa--GUU-CGG--------CCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 40914 0.74 0.195975
Target:  5'- aGGAUCGUGCUCu-GCCGGCuCGAa-- -3'
miRNA:   3'- gUCUAGCGCGAGuuCGGCCG-GCUguu -5'
24079 3' -57.9 NC_005262.1 + 40447 0.69 0.383804
Target:  5'- ----gCGCGCuUCAcGCCGGCCGugGu -3'
miRNA:   3'- gucuaGCGCG-AGUuCGGCCGGCugUu -5'
24079 3' -57.9 NC_005262.1 + 29028 0.68 0.47824
Target:  5'- -cGAUcCGCcgaGCUCGAGCgGcGCCGGCAc -3'
miRNA:   3'- guCUA-GCG---CGAGUUCGgC-CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 10072 0.66 0.582747
Target:  5'- --aGUCGCGUUCGAGCgccaCGGCCuucGACGc -3'
miRNA:   3'- gucUAGCGCGAGUUCG----GCCGG---CUGUu -5'
24079 3' -57.9 NC_005262.1 + 15742 0.69 0.383804
Target:  5'- gCAGGUgcgaccgaCGCGCUugCGGGCgCGGCCGGCu- -3'
miRNA:   3'- -GUCUA--------GCGCGA--GUUCG-GCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 27148 0.66 0.582747
Target:  5'- -uGAaUGCcUUCGAGCCGGCgGACAu -3'
miRNA:   3'- guCUaGCGcGAGUUCGGCCGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 19937 0.66 0.593537
Target:  5'- -cGAUCGCGCcgaggUCcuGCCGGCCa---- -3'
miRNA:   3'- guCUAGCGCG-----AGuuCGGCCGGcuguu -5'
24079 3' -57.9 NC_005262.1 + 11169 0.68 0.462336
Target:  5'- -cGGUCGCGCgccaCGAGCCGGugcgcuucagcucgcCCGGCu- -3'
miRNA:   3'- guCUAGCGCGa---GUUCGGCC---------------GGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 8214 0.77 0.120308
Target:  5'- aCAGGuccaUCGCGCgcugCGAGCCGGCCGGg-- -3'
miRNA:   3'- -GUCU----AGCGCGa---GUUCGGCCGGCUguu -5'
24079 3' -57.9 NC_005262.1 + 18527 0.67 0.529551
Target:  5'- gCGGAaguUCGCGUUCGAcgcuccgagguuGCCGGUCGcCGAg -3'
miRNA:   3'- -GUCU---AGCGCGAGUU------------CGGCCGGCuGUU- -5'
24079 3' -57.9 NC_005262.1 + 25733 0.69 0.401693
Target:  5'- aAGAUCGCGC-CAgcGGCCGuGCCGuuCGu -3'
miRNA:   3'- gUCUAGCGCGaGU--UCGGC-CGGCu-GUu -5'
24079 3' -57.9 NC_005262.1 + 31047 0.69 0.383804
Target:  5'- uCAGcaccgCGuCGCUCAcggaguGGUCGGCCGGCAGc -3'
miRNA:   3'- -GUCua---GC-GCGAGU------UCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 29902 0.7 0.349647
Target:  5'- -cGAUCGgGCc---GCCGGCCGACGc -3'
miRNA:   3'- guCUAGCgCGaguuCGGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 52566 0.66 0.550649
Target:  5'- -cGAUCGuCGCugUCGAGCuCGGCgCGGCu- -3'
miRNA:   3'- guCUAGC-GCG--AGUUCG-GCCG-GCUGuu -5'
24079 3' -57.9 NC_005262.1 + 18575 0.66 0.582747
Target:  5'- -----gGCGUUCAGGCCGaGcCCGGCGGa -3'
miRNA:   3'- gucuagCGCGAGUUCGGC-C-GGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 55639 0.69 0.383804
Target:  5'- cCGGGccgCGCGCUCGuGGCCGcGuCCGGCAc -3'
miRNA:   3'- -GUCUa--GCGCGAGU-UCGGC-C-GGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 43879 0.67 0.540065
Target:  5'- -cGAUCGCGCgCA---UGGCCGACAu -3'
miRNA:   3'- guCUAGCGCGaGUucgGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 12556 0.67 0.540065
Target:  5'- gCAGGUCGCgGCggcgcucgUCGAGCUGcugcugccGCCGGCGAg -3'
miRNA:   3'- -GUCUAGCG-CG--------AGUUCGGC--------CGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.