miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 57401 0.67 0.529551
Target:  5'- gAGAUCGaGCUgAccgccgagaAGgCGGCCGACAAc -3'
miRNA:   3'- gUCUAGCgCGAgU---------UCgGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 46750 0.67 0.540065
Target:  5'- -cGAUCGcCGC-CAcGCCGGUCGuACAGg -3'
miRNA:   3'- guCUAGC-GCGaGUuCGGCCGGC-UGUU- -5'
24079 3' -57.9 NC_005262.1 + 49947 0.74 0.206576
Target:  5'- cCGGAUgGCGUgacguUCGAGCCGaucGCCGACGAg -3'
miRNA:   3'- -GUCUAgCGCG-----AGUUCGGC---CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 5974 0.75 0.171535
Target:  5'- gGGGUCG-GCUUuuGCCGGCCGGCu- -3'
miRNA:   3'- gUCUAGCgCGAGuuCGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 10996 0.75 0.166986
Target:  5'- -cGGUCGCGCUC--GCaCGGCUGACGAg -3'
miRNA:   3'- guCUAGCGCGAGuuCG-GCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 43879 0.67 0.540065
Target:  5'- -cGAUCGCGCgCA---UGGCCGACAu -3'
miRNA:   3'- guCUAGCGCGaGUucgGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 11655 0.78 0.104691
Target:  5'- cCGGcGUCGCGCUgCAcGCUGGCCGGCAGa -3'
miRNA:   3'- -GUC-UAGCGCGA-GUuCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 12556 0.67 0.540065
Target:  5'- gCAGGUCGCgGCggcgcucgUCGAGCUGcugcugccGCCGGCGAg -3'
miRNA:   3'- -GUCUAGCG-CG--------AGUUCGGC--------CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 30610 0.7 0.333399
Target:  5'- aAGggCGCGaagaUCGAGCCGccGCCGACGc -3'
miRNA:   3'- gUCuaGCGCg---AGUUCGGC--CGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 5305 0.7 0.366452
Target:  5'- -cGGUCgagGCGgUCgGAGCUGGCCGGCAGg -3'
miRNA:   3'- guCUAG---CGCgAG-UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 17362 0.68 0.458404
Target:  5'- aAGAUCGaCGCgaUCAAgaaccuGCCGGUCGACu- -3'
miRNA:   3'- gUCUAGC-GCG--AGUU------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 17546 0.66 0.582747
Target:  5'- -cGGUCGCGCgCGAGgCGGCagccgCGGCGg -3'
miRNA:   3'- guCUAGCGCGaGUUCgGCCG-----GCUGUu -5'
24079 3' -57.9 NC_005262.1 + 17656 0.66 0.597862
Target:  5'- gAGAUCGCccgccagcgcgccgaGCUgGaagcggcgaagaAGCCGGCCGugGu -3'
miRNA:   3'- gUCUAGCG---------------CGAgU------------UCGGCCGGCugUu -5'
24079 3' -57.9 NC_005262.1 + 12249 0.69 0.410835
Target:  5'- -cGGUCGCGUcgauggUCGGGCaccugucgaucgCGGCCGGCGAg -3'
miRNA:   3'- guCUAGCGCG------AGUUCG------------GCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 57024 0.68 0.439015
Target:  5'- -cGAUCuucaacCGCUUcaagGAGCUGGCCGGCAAg -3'
miRNA:   3'- guCUAGc-----GCGAG----UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 5180 0.68 0.439015
Target:  5'- cCGGcGUCGCGggcgCGGGCgCGGCCGGCGc -3'
miRNA:   3'- -GUC-UAGCGCga--GUUCG-GCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 22209 0.67 0.526412
Target:  5'- cCGGGcUCGCGCUCGacaagcucacggccGcgccgcccacGCCGGCCGGCc- -3'
miRNA:   3'- -GUCU-AGCGCGAGU--------------U----------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 55639 0.69 0.383804
Target:  5'- cCGGGccgCGCGCUCGuGGCCGcGuCCGGCAc -3'
miRNA:   3'- -GUCUa--GCGCGAGU-UCGGC-C-GGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 42737 0.69 0.37506
Target:  5'- --cGUCGCGCUCGGcGCCuacGGCaCGACGAu -3'
miRNA:   3'- gucUAGCGCGAGUU-CGG---CCG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 17140 0.69 0.37506
Target:  5'- aAGAaCGCGCgcgucgcaaUCGAGaaGGCCGGCAAg -3'
miRNA:   3'- gUCUaGCGCG---------AGUUCggCCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.