miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24079 3' -57.9 NC_005262.1 + 55332 0.66 0.571997
Target:  5'- cCAGAUCGacgaGUggaAAGCCGcGCuCGACGAg -3'
miRNA:   3'- -GUCUAGCg---CGag-UUCGGC-CG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 16029 0.66 0.56557
Target:  5'- -cGAUCGUGUUCGAgaucaucaaccGCCgcuaccgcgacuugcGGCCGACGAu -3'
miRNA:   3'- guCUAGCGCGAGUU-----------CGG---------------CCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 23433 0.66 0.561295
Target:  5'- ----cCGCGUcaUCGAGCCGuCCGACGAc -3'
miRNA:   3'- gucuaGCGCG--AGUUCGGCcGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 53507 0.66 0.561295
Target:  5'- gCAGA-CGcCGCagGGGCCGGCCcaGAUAAa -3'
miRNA:   3'- -GUCUaGC-GCGagUUCGGCCGG--CUGUU- -5'
24079 3' -57.9 NC_005262.1 + 35671 0.66 0.550649
Target:  5'- gCAGcUCGUGCUCAcGUCGaGCgGGCAc -3'
miRNA:   3'- -GUCuAGCGCGAGUuCGGC-CGgCUGUu -5'
24079 3' -57.9 NC_005262.1 + 33891 0.66 0.550649
Target:  5'- -cGAUCGUGC----GUCGGCCGGCGg -3'
miRNA:   3'- guCUAGCGCGaguuCGGCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 60174 0.67 0.544291
Target:  5'- -uGAagGCGCUCggccaguggGcggcaaccggcaaggAGCCGGCCGGCGAg -3'
miRNA:   3'- guCUagCGCGAG---------U---------------UCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 46750 0.67 0.540065
Target:  5'- -cGAUCGcCGC-CAcGCCGGUCGuACAGg -3'
miRNA:   3'- guCUAGC-GCGaGUuCGGCCGGC-UGUU- -5'
24079 3' -57.9 NC_005262.1 + 12556 0.67 0.540065
Target:  5'- gCAGGUCGCgGCggcgcucgUCGAGCUGcugcugccGCCGGCGAg -3'
miRNA:   3'- -GUCUAGCG-CG--------AGUUCGGC--------CGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 38818 0.67 0.533748
Target:  5'- aCGGAUacgcugaccgucucgCGUGCUCAGGaaGGCaCGGCAGc -3'
miRNA:   3'- -GUCUA---------------GCGCGAGUUCggCCG-GCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 57401 0.67 0.529551
Target:  5'- gAGAUCGaGCUgAccgccgagaAGgCGGCCGACAAc -3'
miRNA:   3'- gUCUAGCgCGAgU---------UCgGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 32680 0.67 0.529551
Target:  5'- gAGuUCGCGCU---GCCGGCCGcCGg -3'
miRNA:   3'- gUCuAGCGCGAguuCGGCCGGCuGUu -5'
24079 3' -57.9 NC_005262.1 + 22209 0.67 0.526412
Target:  5'- cCGGGcUCGCGCUCGacaagcucacggccGcgccgcccacGCCGGCCGGCc- -3'
miRNA:   3'- -GUCU-AGCGCGAGU--------------U----------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 17362 0.68 0.458404
Target:  5'- aAGAUCGaCGCgaUCAAgaaccuGCCGGUCGACu- -3'
miRNA:   3'- gUCUAGC-GCG--AGUU------CGGCCGGCUGuu -5'
24079 3' -57.9 NC_005262.1 + 5180 0.68 0.439015
Target:  5'- cCGGcGUCGCGggcgCGGGCgCGGCCGGCGc -3'
miRNA:   3'- -GUC-UAGCGCga--GUUCG-GCCGGCUGUu -5'
24079 3' -57.9 NC_005262.1 + 57024 0.68 0.439015
Target:  5'- -cGAUCuucaacCGCUUcaagGAGCUGGCCGGCAAg -3'
miRNA:   3'- guCUAGc-----GCGAG----UUCGGCCGGCUGUU- -5'
24079 3' -57.9 NC_005262.1 + 53864 1.06 0.00098
Target:  5'- gCAGAUCGCGCUCAAGCCGGCCGACAAg -3'
miRNA:   3'- -GUCUAGCGCGAGUUCGGCCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.