miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 3' -54.9 NC_005262.1 + 2771 0.66 0.783855
Target:  5'- -uGGUUGCgguuagC-AGACGuCUCGGCGAg- -3'
miRNA:   3'- ugUCAGCGa-----GuUCUGC-GAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 32970 0.66 0.783855
Target:  5'- uGCGcGUCGC-CGAGACGCgcacCGgguuuGCGAUGu -3'
miRNA:   3'- -UGU-CAGCGaGUUCUGCGa---GC-----CGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 51196 0.66 0.783855
Target:  5'- gGCGGccCGCUgGAGcCGCgcgGGCGAUGc -3'
miRNA:   3'- -UGUCa-GCGAgUUCuGCGag-CCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 36447 0.66 0.783855
Target:  5'- -uGGUCGUUCAAGAaGUcUGGCGcAUGg -3'
miRNA:   3'- ugUCAGCGAGUUCUgCGaGCCGC-UAC- -5'
24080 3' -54.9 NC_005262.1 + 15574 0.66 0.783855
Target:  5'- aGCAGgaggaGCUgGAGGCGCgcgCGcGCGAg- -3'
miRNA:   3'- -UGUCag---CGAgUUCUGCGa--GC-CGCUac -5'
24080 3' -54.9 NC_005262.1 + 60164 0.66 0.773916
Target:  5'- cCGGcCGCcgUgAAGGCGCUCGGCcaGUGg -3'
miRNA:   3'- uGUCaGCG--AgUUCUGCGAGCCGc-UAC- -5'
24080 3' -54.9 NC_005262.1 + 29906 0.66 0.763833
Target:  5'- gACGGUUcggGCgaugCGAccACGCUCGGCGAUa -3'
miRNA:   3'- -UGUCAG---CGa---GUUc-UGCGAGCCGCUAc -5'
24080 3' -54.9 NC_005262.1 + 35622 0.66 0.753615
Target:  5'- uGCAGUCGUccggCAacGGcACGCggcgGGCGAUGg -3'
miRNA:   3'- -UGUCAGCGa---GU--UC-UGCGag--CCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 3428 0.66 0.753615
Target:  5'- cGCA-UCGCuUCAGcGCGCUCGGgGAUc -3'
miRNA:   3'- -UGUcAGCG-AGUUcUGCGAGCCgCUAc -5'
24080 3' -54.9 NC_005262.1 + 52210 0.66 0.753615
Target:  5'- -aAGUCGCUCGAG-CGCUggccgccgcCGGCa--- -3'
miRNA:   3'- ugUCAGCGAGUUCuGCGA---------GCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 60535 0.67 0.735969
Target:  5'- gACGGUCGaCUucgaccgCAAGggcacgcugacgccgGCGCUCGGCGcgGu -3'
miRNA:   3'- -UGUCAGC-GA-------GUUC---------------UGCGAGCCGCuaC- -5'
24080 3' -54.9 NC_005262.1 + 21293 0.67 0.732822
Target:  5'- aGCAGaUGCguc--GCGUUCGGCGAUGa -3'
miRNA:   3'- -UGUCaGCGaguucUGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 52485 0.67 0.72227
Target:  5'- aGCAGcCGCUgAagcGGACGCa-GGCGAUc -3'
miRNA:   3'- -UGUCaGCGAgU---UCUGCGagCCGCUAc -5'
24080 3' -54.9 NC_005262.1 + 8903 0.67 0.72227
Target:  5'- gACGGUcCGCUCuuGGGUGCgCGGCGAa- -3'
miRNA:   3'- -UGUCA-GCGAGu-UCUGCGaGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 55026 0.67 0.72227
Target:  5'- cGCGGUCgGCgcgggCAAGACGUUCa-CGAUGa -3'
miRNA:   3'- -UGUCAG-CGa----GUUCUGCGAGccGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 29465 0.67 0.711629
Target:  5'- cGCAgGUCGC-CGAGGCGaa-GGCGAa- -3'
miRNA:   3'- -UGU-CAGCGaGUUCUGCgagCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 55469 0.67 0.711629
Target:  5'- uGCuGUCGUUCGAGGaGCUgGGCGu-- -3'
miRNA:   3'- -UGuCAGCGAGUUCUgCGAgCCGCuac -5'
24080 3' -54.9 NC_005262.1 + 48818 0.67 0.711629
Target:  5'- cCGGUCGUcggCAAGcCGUUCguugaGGCGAUGg -3'
miRNA:   3'- uGUCAGCGa--GUUCuGCGAG-----CCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 19297 0.67 0.700911
Target:  5'- --cGUCGCagcCGAcgUGCUCGGCGAUGc -3'
miRNA:   3'- uguCAGCGa--GUUcuGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 12468 0.67 0.700911
Target:  5'- --cGUCGCUCAcgGGGCGCcgcgCGGCa--- -3'
miRNA:   3'- uguCAGCGAGU--UCUGCGa---GCCGcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.