Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 5079 | 0.67 | 0.690126 |
Target: 5'- gGCGG-CGCgugcGACcgGCUCGGCGGUGc -3' miRNA: 3'- -UGUCaGCGaguuCUG--CGAGCCGCUAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 43853 | 0.67 | 0.690126 |
Target: 5'- gGCGGUgCGCcggCAGGAC-CUCGGCGc-- -3' miRNA: 3'- -UGUCA-GCGa--GUUCUGcGAGCCGCuac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 7657 | 0.67 | 0.690126 |
Target: 5'- uCAGcUUGCuguUCGGGuCGCUCGGCGcgGu -3' miRNA: 3'- uGUC-AGCG---AGUUCuGCGAGCCGCuaC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 35641 | 0.67 | 0.679286 |
Target: 5'- cGCAGUUGCgccgcGCGCUCGGgGAa- -3' miRNA: 3'- -UGUCAGCGaguucUGCGAGCCgCUac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 26766 | 0.67 | 0.679286 |
Target: 5'- cACuGUUGC-CAAGGCGCuUCGGCa--- -3' miRNA: 3'- -UGuCAGCGaGUUCUGCG-AGCCGcuac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 59960 | 0.68 | 0.657484 |
Target: 5'- gGCAcGUcaCGCgCGGGGCGCUCGGCa--- -3' miRNA: 3'- -UGU-CA--GCGaGUUCUGCGAGCCGcuac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 61536 | 0.68 | 0.646542 |
Target: 5'- cCAG-CGCUacagCAAGGCGauCUCGGCGAUc -3' miRNA: 3'- uGUCaGCGA----GUUCUGC--GAGCCGCUAc -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 19429 | 0.68 | 0.635588 |
Target: 5'- cGCAGUCGCggCAucugaaGCGCUgGGCGuUGg -3' miRNA: 3'- -UGUCAGCGa-GUuc----UGCGAgCCGCuAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 42014 | 0.69 | 0.613679 |
Target: 5'- -gGGUCGagcaugcCGAGAUGCUUGGCGAc- -3' miRNA: 3'- ugUCAGCga-----GUUCUGCGAGCCGCUac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 26793 | 0.69 | 0.613679 |
Target: 5'- gGCGGauUCGCUUGAGGCGCcCGGCc--- -3' miRNA: 3'- -UGUC--AGCGAGUUCUGCGaGCCGcuac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 45381 | 0.7 | 0.548613 |
Target: 5'- gGCaAGUCGCgcUCAuugAGGCGCUCGGaagcCGGUGc -3' miRNA: 3'- -UG-UCAGCG--AGU---UCUGCGAGCC----GCUAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 53991 | 0.7 | 0.527362 |
Target: 5'- aGCGGUCGCcCGAGuugGCGUUCgacgacgaGGCGAUGc -3' miRNA: 3'- -UGUCAGCGaGUUC---UGCGAG--------CCGCUAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 49343 | 0.7 | 0.506426 |
Target: 5'- aGCAGgcgcgcgccgCGCUCGcuGACGaCUCGGCGAc- -3' miRNA: 3'- -UGUCa---------GCGAGUu-CUGC-GAGCCGCUac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 17544 | 0.71 | 0.485853 |
Target: 5'- cGCGGUCGCgcgCGAGGCGgCagccgCGGCGGc- -3' miRNA: 3'- -UGUCAGCGa--GUUCUGC-Ga----GCCGCUac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 19073 | 0.71 | 0.475716 |
Target: 5'- gAUAGUCGCggcCGAGcugcauuuccucGCGCgCGGCGAUGc -3' miRNA: 3'- -UGUCAGCGa--GUUC------------UGCGaGCCGCUAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 49620 | 0.71 | 0.455767 |
Target: 5'- --cGUCGCUaaccAGGCGCUCGGUGGc- -3' miRNA: 3'- uguCAGCGAgu--UCUGCGAGCCGCUac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 50827 | 0.71 | 0.445962 |
Target: 5'- cGCGGUCGUcgacgcCGAGcCGgUCGGCGAUGc -3' miRNA: 3'- -UGUCAGCGa-----GUUCuGCgAGCCGCUAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 5032 | 0.72 | 0.436277 |
Target: 5'- gGCAGUUGCUCGccggccGGCGCcugaUCGGCGGg- -3' miRNA: 3'- -UGUCAGCGAGUu-----CUGCG----AGCCGCUac -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 22607 | 0.73 | 0.389744 |
Target: 5'- aGCGGUCGC-CGGGcgcgcACGCgaucgCGGCGGUGc -3' miRNA: 3'- -UGUCAGCGaGUUC-----UGCGa----GCCGCUAC- -5' |
|||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 39133 | 0.73 | 0.354933 |
Target: 5'- --uGUCGCUCAAcGACGCU-GGCGAc- -3' miRNA: 3'- uguCAGCGAGUU-CUGCGAgCCGCUac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home