miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 3' -54.9 NC_005262.1 + 2771 0.66 0.783855
Target:  5'- -uGGUUGCgguuagC-AGACGuCUCGGCGAg- -3'
miRNA:   3'- ugUCAGCGa-----GuUCUGC-GAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 3428 0.66 0.753615
Target:  5'- cGCA-UCGCuUCAGcGCGCUCGGgGAUc -3'
miRNA:   3'- -UGUcAGCG-AGUUcUGCGAGCCgCUAc -5'
24080 3' -54.9 NC_005262.1 + 5032 0.72 0.436277
Target:  5'- gGCAGUUGCUCGccggccGGCGCcugaUCGGCGGg- -3'
miRNA:   3'- -UGUCAGCGAGUu-----CUGCG----AGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 5079 0.67 0.690126
Target:  5'- gGCGG-CGCgugcGACcgGCUCGGCGGUGc -3'
miRNA:   3'- -UGUCaGCGaguuCUG--CGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 7657 0.67 0.690126
Target:  5'- uCAGcUUGCuguUCGGGuCGCUCGGCGcgGu -3'
miRNA:   3'- uGUC-AGCG---AGUUCuGCGAGCCGCuaC- -5'
24080 3' -54.9 NC_005262.1 + 8903 0.67 0.72227
Target:  5'- gACGGUcCGCUCuuGGGUGCgCGGCGAa- -3'
miRNA:   3'- -UGUCA-GCGAGu-UCUGCGaGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 12468 0.67 0.700911
Target:  5'- --cGUCGCUCAcgGGGCGCcgcgCGGCa--- -3'
miRNA:   3'- uguCAGCGAGU--UCUGCGa---GCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 15574 0.66 0.783855
Target:  5'- aGCAGgaggaGCUgGAGGCGCgcgCGcGCGAg- -3'
miRNA:   3'- -UGUCag---CGAgUUCUGCGa--GC-CGCUac -5'
24080 3' -54.9 NC_005262.1 + 17544 0.71 0.485853
Target:  5'- cGCGGUCGCgcgCGAGGCGgCagccgCGGCGGc- -3'
miRNA:   3'- -UGUCAGCGa--GUUCUGC-Ga----GCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 19073 0.71 0.475716
Target:  5'- gAUAGUCGCggcCGAGcugcauuuccucGCGCgCGGCGAUGc -3'
miRNA:   3'- -UGUCAGCGa--GUUC------------UGCGaGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 19297 0.67 0.700911
Target:  5'- --cGUCGCagcCGAcgUGCUCGGCGAUGc -3'
miRNA:   3'- uguCAGCGa--GUUcuGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 19429 0.68 0.635588
Target:  5'- cGCAGUCGCggCAucugaaGCGCUgGGCGuUGg -3'
miRNA:   3'- -UGUCAGCGa-GUuc----UGCGAgCCGCuAC- -5'
24080 3' -54.9 NC_005262.1 + 21293 0.67 0.732822
Target:  5'- aGCAGaUGCguc--GCGUUCGGCGAUGa -3'
miRNA:   3'- -UGUCaGCGaguucUGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 22607 0.73 0.389744
Target:  5'- aGCGGUCGC-CGGGcgcgcACGCgaucgCGGCGGUGc -3'
miRNA:   3'- -UGUCAGCGaGUUC-----UGCGa----GCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 26766 0.67 0.679286
Target:  5'- cACuGUUGC-CAAGGCGCuUCGGCa--- -3'
miRNA:   3'- -UGuCAGCGaGUUCUGCG-AGCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 26793 0.69 0.613679
Target:  5'- gGCGGauUCGCUUGAGGCGCcCGGCc--- -3'
miRNA:   3'- -UGUC--AGCGAGUUCUGCGaGCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 29465 0.67 0.711629
Target:  5'- cGCAgGUCGC-CGAGGCGaa-GGCGAa- -3'
miRNA:   3'- -UGU-CAGCGaGUUCUGCgagCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 29906 0.66 0.763833
Target:  5'- gACGGUUcggGCgaugCGAccACGCUCGGCGAUa -3'
miRNA:   3'- -UGUCAG---CGa---GUUc-UGCGAGCCGCUAc -5'
24080 3' -54.9 NC_005262.1 + 32970 0.66 0.783855
Target:  5'- uGCGcGUCGC-CGAGACGCgcacCGgguuuGCGAUGu -3'
miRNA:   3'- -UGU-CAGCGaGUUCUGCGa---GC-----CGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 35622 0.66 0.753615
Target:  5'- uGCAGUCGUccggCAacGGcACGCggcgGGCGAUGg -3'
miRNA:   3'- -UGUCAGCGa---GU--UC-UGCGag--CCGCUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.