Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24080 | 3' | -54.9 | NC_005262.1 | + | 35641 | 0.67 | 0.679286 |
Target: 5'- cGCAGUUGCgccgcGCGCUCGGgGAa- -3' miRNA: 3'- -UGUCAGCGaguucUGCGAGCCgCUac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 36447 | 0.66 | 0.783855 |
Target: 5'- -uGGUCGUUCAAGAaGUcUGGCGcAUGg -3' miRNA: 3'- ugUCAGCGAGUUCUgCGaGCCGC-UAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 39133 | 0.73 | 0.354933 |
Target: 5'- --uGUCGCUCAAcGACGCU-GGCGAc- -3' miRNA: 3'- uguCAGCGAGUU-CUGCGAgCCGCUac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 42014 | 0.69 | 0.613679 |
Target: 5'- -gGGUCGagcaugcCGAGAUGCUUGGCGAc- -3' miRNA: 3'- ugUCAGCga-----GUUCUGCGAGCCGCUac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 43853 | 0.67 | 0.690126 |
Target: 5'- gGCGGUgCGCcggCAGGAC-CUCGGCGc-- -3' miRNA: 3'- -UGUCA-GCGa--GUUCUGcGAGCCGCuac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 45381 | 0.7 | 0.548613 |
Target: 5'- gGCaAGUCGCgcUCAuugAGGCGCUCGGaagcCGGUGc -3' miRNA: 3'- -UG-UCAGCG--AGU---UCUGCGAGCC----GCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 48818 | 0.67 | 0.711629 |
Target: 5'- cCGGUCGUcggCAAGcCGUUCguugaGGCGAUGg -3' miRNA: 3'- uGUCAGCGa--GUUCuGCGAG-----CCGCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 49343 | 0.7 | 0.506426 |
Target: 5'- aGCAGgcgcgcgccgCGCUCGcuGACGaCUCGGCGAc- -3' miRNA: 3'- -UGUCa---------GCGAGUu-CUGC-GAGCCGCUac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 49620 | 0.71 | 0.455767 |
Target: 5'- --cGUCGCUaaccAGGCGCUCGGUGGc- -3' miRNA: 3'- uguCAGCGAgu--UCUGCGAGCCGCUac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 50827 | 0.71 | 0.445962 |
Target: 5'- cGCGGUCGUcgacgcCGAGcCGgUCGGCGAUGc -3' miRNA: 3'- -UGUCAGCGa-----GUUCuGCgAGCCGCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 51196 | 0.66 | 0.783855 |
Target: 5'- gGCGGccCGCUgGAGcCGCgcgGGCGAUGc -3' miRNA: 3'- -UGUCa-GCGAgUUCuGCGag-CCGCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 52210 | 0.66 | 0.753615 |
Target: 5'- -aAGUCGCUCGAG-CGCUggccgccgcCGGCa--- -3' miRNA: 3'- ugUCAGCGAGUUCuGCGA---------GCCGcuac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 52485 | 0.67 | 0.72227 |
Target: 5'- aGCAGcCGCUgAagcGGACGCa-GGCGAUc -3' miRNA: 3'- -UGUCaGCGAgU---UCUGCGagCCGCUAc -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 52814 | 0.76 | 0.257435 |
Target: 5'- cGCAGUgGC---AGGCGCUCGGCGAg- -3' miRNA: 3'- -UGUCAgCGaguUCUGCGAGCCGCUac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 53970 | 1.07 | 0.001719 |
Target: 5'- aACAGUCGCUCAAGACGCUCGGCGAUGc -3' miRNA: 3'- -UGUCAGCGAGUUCUGCGAGCCGCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 53991 | 0.7 | 0.527362 |
Target: 5'- aGCGGUCGCcCGAGuugGCGUUCgacgacgaGGCGAUGc -3' miRNA: 3'- -UGUCAGCGaGUUC---UGCGAG--------CCGCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 55026 | 0.67 | 0.72227 |
Target: 5'- cGCGGUCgGCgcgggCAAGACGUUCa-CGAUGa -3' miRNA: 3'- -UGUCAG-CGa----GUUCUGCGAGccGCUAC- -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 55469 | 0.67 | 0.711629 |
Target: 5'- uGCuGUCGUUCGAGGaGCUgGGCGu-- -3' miRNA: 3'- -UGuCAGCGAGUUCUgCGAgCCGCuac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 59960 | 0.68 | 0.657484 |
Target: 5'- gGCAcGUcaCGCgCGGGGCGCUCGGCa--- -3' miRNA: 3'- -UGU-CA--GCGaGUUCUGCGAGCCGcuac -5' |
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24080 | 3' | -54.9 | NC_005262.1 | + | 60164 | 0.66 | 0.773916 |
Target: 5'- cCGGcCGCcgUgAAGGCGCUCGGCcaGUGg -3' miRNA: 3'- uGUCaGCG--AgUUCUGCGAGCCGc-UAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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