miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 3' -54.9 NC_005262.1 + 55026 0.67 0.72227
Target:  5'- cGCGGUCgGCgcgggCAAGACGUUCa-CGAUGa -3'
miRNA:   3'- -UGUCAG-CGa----GUUCUGCGAGccGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 5079 0.67 0.690126
Target:  5'- gGCGG-CGCgugcGACcgGCUCGGCGGUGc -3'
miRNA:   3'- -UGUCaGCGaguuCUG--CGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 12468 0.67 0.700911
Target:  5'- --cGUCGCUCAcgGGGCGCcgcgCGGCa--- -3'
miRNA:   3'- uguCAGCGAGU--UCUGCGa---GCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 19297 0.67 0.700911
Target:  5'- --cGUCGCagcCGAcgUGCUCGGCGAUGc -3'
miRNA:   3'- uguCAGCGa--GUUcuGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 29465 0.67 0.711629
Target:  5'- cGCAgGUCGC-CGAGGCGaa-GGCGAa- -3'
miRNA:   3'- -UGU-CAGCGaGUUCUGCgagCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 48818 0.67 0.711629
Target:  5'- cCGGUCGUcggCAAGcCGUUCguugaGGCGAUGg -3'
miRNA:   3'- uGUCAGCGa--GUUCuGCGAG-----CCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 55469 0.67 0.711629
Target:  5'- uGCuGUCGUUCGAGGaGCUgGGCGu-- -3'
miRNA:   3'- -UGuCAGCGAGUUCUgCGAgCCGCuac -5'
24080 3' -54.9 NC_005262.1 + 8903 0.67 0.72227
Target:  5'- gACGGUcCGCUCuuGGGUGCgCGGCGAa- -3'
miRNA:   3'- -UGUCA-GCGAGu-UCUGCGaGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 52485 0.67 0.72227
Target:  5'- aGCAGcCGCUgAagcGGACGCa-GGCGAUc -3'
miRNA:   3'- -UGUCaGCGAgU---UCUGCGagCCGCUAc -5'
24080 3' -54.9 NC_005262.1 + 43853 0.67 0.690126
Target:  5'- gGCGGUgCGCcggCAGGAC-CUCGGCGc-- -3'
miRNA:   3'- -UGUCA-GCGa--GUUCUGcGAGCCGCuac -5'
24080 3' -54.9 NC_005262.1 + 26766 0.67 0.679286
Target:  5'- cACuGUUGC-CAAGGCGCuUCGGCa--- -3'
miRNA:   3'- -UGuCAGCGaGUUCUGCG-AGCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 61536 0.68 0.646542
Target:  5'- cCAG-CGCUacagCAAGGCGauCUCGGCGAUc -3'
miRNA:   3'- uGUCaGCGA----GUUCUGC--GAGCCGCUAc -5'
24080 3' -54.9 NC_005262.1 + 52814 0.76 0.257435
Target:  5'- cGCAGUgGC---AGGCGCUCGGCGAg- -3'
miRNA:   3'- -UGUCAgCGaguUCUGCGAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 39133 0.73 0.354933
Target:  5'- --uGUCGCUCAAcGACGCU-GGCGAc- -3'
miRNA:   3'- uguCAGCGAGUU-CUGCGAgCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 5032 0.72 0.436277
Target:  5'- gGCAGUUGCUCGccggccGGCGCcugaUCGGCGGg- -3'
miRNA:   3'- -UGUCAGCGAGUu-----CUGCG----AGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 49620 0.71 0.455767
Target:  5'- --cGUCGCUaaccAGGCGCUCGGUGGc- -3'
miRNA:   3'- uguCAGCGAgu--UCUGCGAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 17544 0.71 0.485853
Target:  5'- cGCGGUCGCgcgCGAGGCGgCagccgCGGCGGc- -3'
miRNA:   3'- -UGUCAGCGa--GUUCUGC-Ga----GCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 49343 0.7 0.506426
Target:  5'- aGCAGgcgcgcgccgCGCUCGcuGACGaCUCGGCGAc- -3'
miRNA:   3'- -UGUCa---------GCGAGUu-CUGC-GAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 26793 0.69 0.613679
Target:  5'- gGCGGauUCGCUUGAGGCGCcCGGCc--- -3'
miRNA:   3'- -UGUC--AGCGAGUUCUGCGaGCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 19429 0.68 0.635588
Target:  5'- cGCAGUCGCggCAucugaaGCGCUgGGCGuUGg -3'
miRNA:   3'- -UGUCAGCGa-GUuc----UGCGAgCCGCuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.