miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 3' -54.9 NC_005262.1 + 32970 0.66 0.783855
Target:  5'- uGCGcGUCGC-CGAGACGCgcacCGgguuuGCGAUGu -3'
miRNA:   3'- -UGU-CAGCGaGUUCUGCGa---GC-----CGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 50827 0.71 0.445962
Target:  5'- cGCGGUCGUcgacgcCGAGcCGgUCGGCGAUGc -3'
miRNA:   3'- -UGUCAGCGa-----GUUCuGCgAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 45381 0.7 0.548613
Target:  5'- gGCaAGUCGCgcUCAuugAGGCGCUCGGaagcCGGUGc -3'
miRNA:   3'- -UG-UCAGCG--AGU---UCUGCGAGCC----GCUAC- -5'
24080 3' -54.9 NC_005262.1 + 42014 0.69 0.613679
Target:  5'- -gGGUCGagcaugcCGAGAUGCUUGGCGAc- -3'
miRNA:   3'- ugUCAGCga-----GUUCUGCGAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 35641 0.67 0.679286
Target:  5'- cGCAGUUGCgccgcGCGCUCGGgGAa- -3'
miRNA:   3'- -UGUCAGCGaguucUGCGAGCCgCUac -5'
24080 3' -54.9 NC_005262.1 + 7657 0.67 0.690126
Target:  5'- uCAGcUUGCuguUCGGGuCGCUCGGCGcgGu -3'
miRNA:   3'- uGUC-AGCG---AGUUCuGCGAGCCGCuaC- -5'
24080 3' -54.9 NC_005262.1 + 22607 0.73 0.389744
Target:  5'- aGCGGUCGC-CGGGcgcgcACGCgaucgCGGCGGUGc -3'
miRNA:   3'- -UGUCAGCGaGUUC-----UGCGa----GCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 19073 0.71 0.475716
Target:  5'- gAUAGUCGCggcCGAGcugcauuuccucGCGCgCGGCGAUGc -3'
miRNA:   3'- -UGUCAGCGa--GUUC------------UGCGaGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 59960 0.68 0.657484
Target:  5'- gGCAcGUcaCGCgCGGGGCGCUCGGCa--- -3'
miRNA:   3'- -UGU-CA--GCGaGUUCUGCGAGCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 21293 0.67 0.732822
Target:  5'- aGCAGaUGCguc--GCGUUCGGCGAUGa -3'
miRNA:   3'- -UGUCaGCGaguucUGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 2771 0.66 0.783855
Target:  5'- -uGGUUGCgguuagC-AGACGuCUCGGCGAg- -3'
miRNA:   3'- ugUCAGCGa-----GuUCUGC-GAGCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 52210 0.66 0.753615
Target:  5'- -aAGUCGCUCGAG-CGCUggccgccgcCGGCa--- -3'
miRNA:   3'- ugUCAGCGAGUUCuGCGA---------GCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 53991 0.7 0.527362
Target:  5'- aGCGGUCGCcCGAGuugGCGUUCgacgacgaGGCGAUGc -3'
miRNA:   3'- -UGUCAGCGaGUUC---UGCGAG--------CCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 39133 0.73 0.354933
Target:  5'- --uGUCGCUCAAcGACGCU-GGCGAc- -3'
miRNA:   3'- uguCAGCGAGUU-CUGCGAgCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 17544 0.71 0.485853
Target:  5'- cGCGGUCGCgcgCGAGGCGgCagccgCGGCGGc- -3'
miRNA:   3'- -UGUCAGCGa--GUUCUGC-Ga----GCCGCUac -5'
24080 3' -54.9 NC_005262.1 + 19297 0.67 0.700911
Target:  5'- --cGUCGCagcCGAcgUGCUCGGCGAUGc -3'
miRNA:   3'- uguCAGCGa--GUUcuGCGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 12468 0.67 0.700911
Target:  5'- --cGUCGCUCAcgGGGCGCcgcgCGGCa--- -3'
miRNA:   3'- uguCAGCGAGU--UCUGCGa---GCCGcuac -5'
24080 3' -54.9 NC_005262.1 + 5079 0.67 0.690126
Target:  5'- gGCGG-CGCgugcGACcgGCUCGGCGGUGc -3'
miRNA:   3'- -UGUCaGCGaguuCUG--CGAGCCGCUAC- -5'
24080 3' -54.9 NC_005262.1 + 43853 0.67 0.690126
Target:  5'- gGCGGUgCGCcggCAGGAC-CUCGGCGc-- -3'
miRNA:   3'- -UGUCA-GCGa--GUUCUGcGAGCCGCuac -5'
24080 3' -54.9 NC_005262.1 + 49343 0.7 0.506426
Target:  5'- aGCAGgcgcgcgccgCGCUCGcuGACGaCUCGGCGAc- -3'
miRNA:   3'- -UGUCa---------GCGAGUu-CUGC-GAGCCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.