miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 5' -56.9 NC_005262.1 + 16605 0.66 0.643194
Target:  5'- --gGCGGCGAagcagccgcguuucgAGCugGGCGAUaucgucgugCUGCg -3'
miRNA:   3'- aagUGCCGCU---------------UCGugCCGUUG---------GACGa -5'
24080 5' -56.9 NC_005262.1 + 29411 0.66 0.638799
Target:  5'- aUUCGCauucGGCG-AGUugGCGGUggUCUGCUg -3'
miRNA:   3'- -AAGUG----CCGCuUCG--UGCCGuuGGACGA- -5'
24080 5' -56.9 NC_005262.1 + 39317 0.66 0.638799
Target:  5'- aUCGCGGC-AAGCGCGacGCucguGCCgUGCa -3'
miRNA:   3'- aAGUGCCGcUUCGUGC--CGu---UGG-ACGa -5'
24080 5' -56.9 NC_005262.1 + 52332 0.66 0.638799
Target:  5'- cUCGCGcGCG-AGCGCGGUAgGCacgaUGCg -3'
miRNA:   3'- aAGUGC-CGCuUCGUGCCGU-UGg---ACGa -5'
24080 5' -56.9 NC_005262.1 + 34317 0.66 0.634404
Target:  5'- --uGCGGCuGAuguGCuucgccuucgccuCGGCGACCUGCg -3'
miRNA:   3'- aagUGCCG-CUu--CGu------------GCCGUUGGACGa -5'
24080 5' -56.9 NC_005262.1 + 36129 0.66 0.62781
Target:  5'- -aUACGGCGAGGCGa-GCAccGCCaGCg -3'
miRNA:   3'- aaGUGCCGCUUCGUgcCGU--UGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 14337 0.66 0.62781
Target:  5'- --gGCGGCGAAGUu--GCGACgUGCUu -3'
miRNA:   3'- aagUGCCGCUUCGugcCGUUGgACGA- -5'
24080 5' -56.9 NC_005262.1 + 46227 0.66 0.616825
Target:  5'- aUCAUGGCGAAcUACGGCAucgguAUCgGCg -3'
miRNA:   3'- aAGUGCCGCUUcGUGCCGU-----UGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 49136 0.66 0.616825
Target:  5'- aUC-UGGCGAAGguCGGCAcgguggGCgUGCa -3'
miRNA:   3'- aAGuGCCGCUUCguGCCGU------UGgACGa -5'
24080 5' -56.9 NC_005262.1 + 18688 0.66 0.614629
Target:  5'- gUUCGCGGCacccgccgaguuGAGCGCGGuCAAcguguCCUGCg -3'
miRNA:   3'- -AAGUGCCGc-----------UUCGUGCC-GUU-----GGACGa -5'
24080 5' -56.9 NC_005262.1 + 21607 0.66 0.61024
Target:  5'- cUCGCGGCGAacccugacugcccggAGUgcgACGGCGACg-GCg -3'
miRNA:   3'- aAGUGCCGCU---------------UCG---UGCCGUUGgaCGa -5'
24080 5' -56.9 NC_005262.1 + 49190 0.66 0.605853
Target:  5'- -gCACGGCGAugaucuccGGCAUgcuggccgagGGCGGCCUcgGCg -3'
miRNA:   3'- aaGUGCCGCU--------UCGUG----------CCGUUGGA--CGa -5'
24080 5' -56.9 NC_005262.1 + 55933 0.66 0.605853
Target:  5'- gUC-CGGCGAucgAGgGCGGCGGCCg--- -3'
miRNA:   3'- aAGuGCCGCU---UCgUGCCGUUGGacga -5'
24080 5' -56.9 NC_005262.1 + 15736 0.66 0.602565
Target:  5'- gUCGCGGCaggugcGAccgacgcgcuugcgGGCGCGGCcGgCUGCUg -3'
miRNA:   3'- aAGUGCCG------CU--------------UCGUGCCGuUgGACGA- -5'
24080 5' -56.9 NC_005262.1 + 49240 0.66 0.59928
Target:  5'- -cCGCGGCGAgacgccugccgauccAgcgcauGCACGGCAcuGCCaUGCUg -3'
miRNA:   3'- aaGUGCCGCU---------------U------CGUGCCGU--UGG-ACGA- -5'
24080 5' -56.9 NC_005262.1 + 49673 0.66 0.594903
Target:  5'- -gCAUGGgGAuggucggcGGCGCGcGCAACCUGa- -3'
miRNA:   3'- aaGUGCCgCU--------UCGUGC-CGUUGGACga -5'
24080 5' -56.9 NC_005262.1 + 38835 0.66 0.594903
Target:  5'- cUCGCGuGCucaggaAGGCACGGCAGCgCUcGCg -3'
miRNA:   3'- aAGUGC-CGc-----UUCGUGCCGUUG-GA-CGa -5'
24080 5' -56.9 NC_005262.1 + 38959 0.66 0.594903
Target:  5'- -gCAgGGUGAucGGCACGGC-GCCgGCc -3'
miRNA:   3'- aaGUgCCGCU--UCGUGCCGuUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 12660 0.66 0.594903
Target:  5'- cUUCACGGCGucGAGCGCcuuGuCGACCgGCg -3'
miRNA:   3'- -AAGUGCCGC--UUCGUGc--C-GUUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 47304 0.66 0.594903
Target:  5'- ---uCGGCGAGGCAaagcugaagcUGGCGACCgauucgGCg -3'
miRNA:   3'- aaguGCCGCUUCGU----------GCCGUUGGa-----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.