miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 5' -56.9 NC_005262.1 + 54007 1.04 0.001382
Target:  5'- cUUCACGGCGAAGCACGGCAACCUGCUc -3'
miRNA:   3'- -AAGUGCCGCUUCGUGCCGUUGGACGA- -5'
24080 5' -56.9 NC_005262.1 + 45782 0.88 0.020738
Target:  5'- aUCGCGGCGAAGgGCGGCGGCgUGCUg -3'
miRNA:   3'- aAGUGCCGCUUCgUGCCGUUGgACGA- -5'
24080 5' -56.9 NC_005262.1 + 9360 0.77 0.128562
Target:  5'- cUUCcgguCGGCGc-GCGCGGCGGCCUGCg -3'
miRNA:   3'- -AAGu---GCCGCuuCGUGCCGUUGGACGa -5'
24080 5' -56.9 NC_005262.1 + 5072 0.76 0.156011
Target:  5'- -cCGCGGCGGcGGCGCGuGCGACCgGCUc -3'
miRNA:   3'- aaGUGCCGCU-UCGUGC-CGUUGGaCGA- -5'
24080 5' -56.9 NC_005262.1 + 12657 0.76 0.160341
Target:  5'- -gCGCGcGCGgcGCGCGGCGAacCCUGCg -3'
miRNA:   3'- aaGUGC-CGCuuCGUGCCGUU--GGACGa -5'
24080 5' -56.9 NC_005262.1 + 54521 0.75 0.172577
Target:  5'- aUCACGGUGAAGCugGGCcagaauuggauuccGGCCaGCg -3'
miRNA:   3'- aAGUGCCGCUUCGugCCG--------------UUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 15479 0.75 0.173987
Target:  5'- -gCACGGCGcuuacaccGAGCGCGGCGGCUcGCUc -3'
miRNA:   3'- aaGUGCCGC--------UUCGUGCCGUUGGaCGA- -5'
24080 5' -56.9 NC_005262.1 + 25877 0.74 0.227166
Target:  5'- aUCGaGGCGAAGCACGGCAucacgaucgauGCCgaGCa -3'
miRNA:   3'- aAGUgCCGCUUCGUGCCGU-----------UGGa-CGa -5'
24080 5' -56.9 NC_005262.1 + 10483 0.73 0.250093
Target:  5'- --aGCGGCGAccagcagcagcgccAGCAUGGCGGCCaGCa -3'
miRNA:   3'- aagUGCCGCU--------------UCGUGCCGUUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 44165 0.72 0.272124
Target:  5'- aUCG-GGCaGGAGCGCGGCGGCgaGCUc -3'
miRNA:   3'- aAGUgCCG-CUUCGUGCCGUUGgaCGA- -5'
24080 5' -56.9 NC_005262.1 + 35065 0.72 0.279101
Target:  5'- aUCACGGCGuccgGGCGCG-CGGCCUcGCg -3'
miRNA:   3'- aAGUGCCGCu---UCGUGCcGUUGGA-CGa -5'
24080 5' -56.9 NC_005262.1 + 16976 0.72 0.279101
Target:  5'- uUUCuCGGCGAGcGCGCGG--GCCUGCa -3'
miRNA:   3'- -AAGuGCCGCUU-CGUGCCguUGGACGa -5'
24080 5' -56.9 NC_005262.1 + 60216 0.72 0.29348
Target:  5'- ---cCGGCGAGGU-CGGCAAgCUGCUg -3'
miRNA:   3'- aaguGCCGCUUCGuGCCGUUgGACGA- -5'
24080 5' -56.9 NC_005262.1 + 35360 0.72 0.300137
Target:  5'- -aCACGGCGAgcacGGCGCGGCccgauucGACCUcgaGCa -3'
miRNA:   3'- aaGUGCCGCU----UCGUGCCG-------UUGGA---CGa -5'
24080 5' -56.9 NC_005262.1 + 17548 0.72 0.300884
Target:  5'- gUCGCGcGCGAGGC--GGCAGCCgcgGCg -3'
miRNA:   3'- aAGUGC-CGCUUCGugCCGUUGGa--CGa -5'
24080 5' -56.9 NC_005262.1 + 61408 0.72 0.308431
Target:  5'- cUCGCGcGCGAGGCgaagGCGGCGGCCg--- -3'
miRNA:   3'- aAGUGC-CGCUUCG----UGCCGUUGGacga -5'
24080 5' -56.9 NC_005262.1 + 13477 0.71 0.340056
Target:  5'- -gCGCGGCG-GGCGCuGCGGCCgGCUc -3'
miRNA:   3'- aaGUGCCGCuUCGUGcCGUUGGaCGA- -5'
24080 5' -56.9 NC_005262.1 + 14449 0.71 0.340056
Target:  5'- gUCGuCaGCG-AGCGCGGCGcgcGCCUGCUc -3'
miRNA:   3'- aAGU-GcCGCuUCGUGCCGU---UGGACGA- -5'
24080 5' -56.9 NC_005262.1 + 51641 0.71 0.347488
Target:  5'- -gCGCGGCcuucagguucGAaaccuggcucuccAGCGCGGCGAUCUGCUc -3'
miRNA:   3'- aaGUGCCG----------CU-------------UCGUGCCGUUGGACGA- -5'
24080 5' -56.9 NC_005262.1 + 17744 0.71 0.348321
Target:  5'- -gCACGGUGAAGCggGCGGaCGACacgCUGCUc -3'
miRNA:   3'- aaGUGCCGCUUCG--UGCC-GUUG---GACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.