miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24080 5' -56.9 NC_005262.1 + 2659 0.67 0.530154
Target:  5'- -gCGCGGCGccGgGCGGCGuCCUGg- -3'
miRNA:   3'- aaGUGCCGCuuCgUGCCGUuGGACga -5'
24080 5' -56.9 NC_005262.1 + 3264 0.67 0.529094
Target:  5'- cUUGCGGuCGAAGuCGaccgucacgcucuUGGCGGCCUGCg -3'
miRNA:   3'- aAGUGCC-GCUUC-GU-------------GCCGUUGGACGa -5'
24080 5' -56.9 NC_005262.1 + 4560 0.67 0.562278
Target:  5'- -gCGCGGCGcaucucGCgccaGCGGCGGCgCUGCUc -3'
miRNA:   3'- aaGUGCCGCuu----CG----UGCCGUUG-GACGA- -5'
24080 5' -56.9 NC_005262.1 + 4816 0.67 0.530154
Target:  5'- -gCGCGG-GAGGCGugaggccgcCGGCGGCCgGCUg -3'
miRNA:   3'- aaGUGCCgCUUCGU---------GCCGUUGGaCGA- -5'
24080 5' -56.9 NC_005262.1 + 4865 0.69 0.428956
Target:  5'- gUCGCGGCGcagcuugccGAGCGCcgacuCGACCUGCUu -3'
miRNA:   3'- aAGUGCCGC---------UUCGUGcc---GUUGGACGA- -5'
24080 5' -56.9 NC_005262.1 + 5072 0.76 0.156011
Target:  5'- -cCGCGGCGGcGGCGCGuGCGACCgGCUc -3'
miRNA:   3'- aaGUGCCGCU-UCGUGC-CGUUGGaCGA- -5'
24080 5' -56.9 NC_005262.1 + 5185 0.68 0.498726
Target:  5'- gUCGCGGgCGcGGGCGCGGCcggcgcGACCgaggGCg -3'
miRNA:   3'- aAGUGCC-GC-UUCGUGCCG------UUGGa---CGa -5'
24080 5' -56.9 NC_005262.1 + 6994 0.69 0.410096
Target:  5'- -gUACGGCGAcgcuucgaacAGCGCGGCGGCUucgGUg -3'
miRNA:   3'- aaGUGCCGCU----------UCGUGCCGUUGGa--CGa -5'
24080 5' -56.9 NC_005262.1 + 9360 0.77 0.128562
Target:  5'- cUUCcgguCGGCGc-GCGCGGCGGCCUGCg -3'
miRNA:   3'- -AAGu---GCCGCuuCGUGCCGUUGGACGa -5'
24080 5' -56.9 NC_005262.1 + 10483 0.73 0.250093
Target:  5'- --aGCGGCGAccagcagcagcgccAGCAUGGCGGCCaGCa -3'
miRNA:   3'- aagUGCCGCU--------------UCGUGCCGUUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 11098 0.67 0.562278
Target:  5'- gUC-CGGCGucGGCcgGCGGCcuuCCUGCUc -3'
miRNA:   3'- aAGuGCCGCu-UCG--UGCCGuu-GGACGA- -5'
24080 5' -56.9 NC_005262.1 + 11138 0.67 0.53866
Target:  5'- cUUCugGGCGuggcuccggucGCACgGGCGGcCCUGCg -3'
miRNA:   3'- -AAGugCCGCuu---------CGUG-CCGUU-GGACGa -5'
24080 5' -56.9 NC_005262.1 + 11565 0.67 0.572022
Target:  5'- aUCACGcGCGcuGCuaugccgGCGGCGGCCaGCg -3'
miRNA:   3'- aAGUGC-CGCuuCG-------UGCCGUUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 12033 0.68 0.519592
Target:  5'- gUCGCGcGCGuccccGGCAUGGCAgACCUcacGCUg -3'
miRNA:   3'- aAGUGC-CGCu----UCGUGCCGU-UGGA---CGA- -5'
24080 5' -56.9 NC_005262.1 + 12409 0.7 0.39176
Target:  5'- -aCACGGUcAGGCGCGGCcuuGGCCgGCg -3'
miRNA:   3'- aaGUGCCGcUUCGUGCCG---UUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 12560 0.69 0.45818
Target:  5'- gUCGCGGCGgcGCuCGuCGAgCUGCUg -3'
miRNA:   3'- aAGUGCCGCuuCGuGCcGUUgGACGA- -5'
24080 5' -56.9 NC_005262.1 + 12657 0.76 0.160341
Target:  5'- -gCGCGcGCGgcGCGCGGCGAacCCUGCg -3'
miRNA:   3'- aaGUGC-CGCuuCGUGCCGUU--GGACGa -5'
24080 5' -56.9 NC_005262.1 + 12660 0.66 0.594903
Target:  5'- cUUCACGGCGucGAGCGCcuuGuCGACCgGCg -3'
miRNA:   3'- -AAGUGCCGC--UUCGUGc--C-GUUGGaCGa -5'
24080 5' -56.9 NC_005262.1 + 12784 0.69 0.438576
Target:  5'- aUCACGGCGcGGuCGcCGGUcgcuuccuuGGCCUGCUc -3'
miRNA:   3'- aAGUGCCGCuUC-GU-GCCG---------UUGGACGA- -5'
24080 5' -56.9 NC_005262.1 + 13477 0.71 0.340056
Target:  5'- -gCGCGGCG-GGCGCuGCGGCCgGCUc -3'
miRNA:   3'- aaGUGCCGCuUCGUGcCGUUGGaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.