Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24081 | 3' | -59.7 | NC_005262.1 | + | 54364 | 1.1 | 0.000466 |
Target: 5'- cCCGGCGAAGGGCUGGCAGACGUCCGAc -3' miRNA: 3'- -GGCCGCUUCCCGACCGUCUGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 36315 | 0.66 | 0.565979 |
Target: 5'- uUCGGUGggGGGCcGGU--GCGcucgCCGGc -3' miRNA: 3'- -GGCCGCuuCCCGaCCGucUGCa---GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 35594 | 0.66 | 0.532233 |
Target: 5'- cUCGGCGc-GGGCUcGGCacagauggcguugcAGuCGUCCGGc -3' miRNA: 3'- -GGCCGCuuCCCGA-CCG--------------UCuGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 34789 | 0.67 | 0.505173 |
Target: 5'- aUCGGUGAAGGugUGGCuucgccucaAGcCGUCCGAg -3' miRNA: 3'- -GGCCGCUUCCcgACCG---------UCuGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 5179 | 0.67 | 0.505173 |
Target: 5'- gCCGGCGucgcGGGCgcgGGCGcggccGGCGcgaCCGAg -3' miRNA: 3'- -GGCCGCuu--CCCGa--CCGU-----CUGCa--GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 60601 | 0.67 | 0.4953 |
Target: 5'- cCCGGCGAuacAGGGCacGGCGaACG-CCa- -3' miRNA: 3'- -GGCCGCU---UCCCGa-CCGUcUGCaGGcu -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 36476 | 0.68 | 0.428899 |
Target: 5'- gCGcGCGA--GGCUGGCGGACaUCgCGAa -3' miRNA: 3'- gGC-CGCUucCCGACCGUCUGcAG-GCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 49281 | 0.71 | 0.306092 |
Target: 5'- gCCGGa--AGuGCUGGC-GACGUCCGAg -3' miRNA: 3'- -GGCCgcuUCcCGACCGuCUGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 60746 | 0.72 | 0.234426 |
Target: 5'- cUCGGCGAA-GGCUGGgAGACGcgCuCGAa -3' miRNA: 3'- -GGCCGCUUcCCGACCgUCUGCa-G-GCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 55934 | 0.74 | 0.177394 |
Target: 5'- uCCGGCGAucgAGGGC-GGCGGcCGUCaGAu -3' miRNA: 3'- -GGCCGCU---UCCCGaCCGUCuGCAGgCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 45785 | 0.77 | 0.107443 |
Target: 5'- gCGGCGAAGGGC-GGCGG-CGUgCUGAu -3' miRNA: 3'- gGCCGCUUCCCGaCCGUCuGCA-GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 54809 | 0.67 | 0.475824 |
Target: 5'- gCGGcCGAuuuaugcgcGGGGUUGGCuGGC-UCCGGa -3' miRNA: 3'- gGCC-GCU---------UCCCGACCGuCUGcAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 15718 | 0.67 | 0.4953 |
Target: 5'- gUCGGCGccGGGCggcucgucgcGGCAGguGCGaCCGAc -3' miRNA: 3'- -GGCCGCuuCCCGa---------CCGUC--UGCaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 4835 | 0.67 | 0.505173 |
Target: 5'- gCCGGCGGccGGCUGGUucgacugcuGCGcgCCGAc -3' miRNA: 3'- -GGCCGCUucCCGACCGuc-------UGCa-GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 13767 | 0.66 | 0.524158 |
Target: 5'- gCCGGCGccggcucGGGCUucacuucGGUGGGCG-CCGGc -3' miRNA: 3'- -GGCCGCuu-----CCCGA-------CCGUCUGCaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 6632 | 0.66 | 0.535273 |
Target: 5'- gCGGCGAGGGGUcgccGgGGAUGUcgaCCGAc -3' miRNA: 3'- gGCCGCUUCCCGac--CgUCUGCA---GGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 11893 | 0.66 | 0.535273 |
Target: 5'- gCCGGCGAAGcGGUcGGU-GcCGUUCGGc -3' miRNA: 3'- -GGCCGCUUC-CCGaCCGuCuGCAGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 10856 | 0.66 | 0.545449 |
Target: 5'- gCCGGCGAAGcccaGGCgGcGCAGGcCGUCguaGAu -3' miRNA: 3'- -GGCCGCUUC----CCGaC-CGUCU-GCAGg--CU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 61362 | 0.66 | 0.545449 |
Target: 5'- aCCGGCGAGuGGCaGGCAG----CCGAg -3' miRNA: 3'- -GGCCGCUUcCCGaCCGUCugcaGGCU- -5' |
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24081 | 3' | -59.7 | NC_005262.1 | + | 17212 | 0.7 | 0.341479 |
Target: 5'- gCGGCGAGgacGGcGCUGGCgucguggucgucguGGGCGUCgCGGg -3' miRNA: 3'- gGCCGCUU---CC-CGACCG--------------UCUGCAG-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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