miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24081 5' -55.8 NC_005262.1 + 50377 0.67 0.66432
Target:  5'- -uUCGGugACGAUGUUGUGCccgcucucGCgGAGCUCg -3'
miRNA:   3'- acAGCC--UGCUGCAGCACG--------CG-UUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 34127 0.67 0.66432
Target:  5'- gGUUGGGCGggcuGCG-CGgGCGCGGGCg- -3'
miRNA:   3'- aCAGCCUGC----UGCaGCaCGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 56882 0.67 0.66432
Target:  5'- gGcCGGACGcAgGUCGaGCGCGAcaacacGCUCg -3'
miRNA:   3'- aCaGCCUGC-UgCAGCaCGCGUU------CGAG- -5'
24081 5' -55.8 NC_005262.1 + 32306 0.67 0.653508
Target:  5'- cGUCGaGGCaGCG-CGUGCGCu-GUUCa -3'
miRNA:   3'- aCAGC-CUGcUGCaGCACGCGuuCGAG- -5'
24081 5' -55.8 NC_005262.1 + 41537 0.67 0.642677
Target:  5'- cGUauGGCGACGgcgUGaUGCGCAGGC-Cg -3'
miRNA:   3'- aCAgcCUGCUGCa--GC-ACGCGUUCGaG- -5'
24081 5' -55.8 NC_005262.1 + 21041 0.68 0.620997
Target:  5'- cGUCGcGAccaCGAuCGUCGUGCcGUAGGCg- -3'
miRNA:   3'- aCAGC-CU---GCU-GCAGCACG-CGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 13790 0.68 0.610166
Target:  5'- -uUCGGugGGCGcCG-GCGC-GGCUUc -3'
miRNA:   3'- acAGCCugCUGCaGCaCGCGuUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 37872 0.68 0.610166
Target:  5'- aGUCGGcgucgcgcgugGCGACGUaccaUGCGCGcuGCUCg -3'
miRNA:   3'- aCAGCC-----------UGCUGCAgc--ACGCGUu-CGAG- -5'
24081 5' -55.8 NC_005262.1 + 38967 0.68 0.599354
Target:  5'- -aUCGGcACGGCGcCGgccgcgauCGCGAGCUCg -3'
miRNA:   3'- acAGCC-UGCUGCaGCac------GCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 25537 0.68 0.588569
Target:  5'- cGUC--GCGACGUcCGUGCGCGgcGGCa- -3'
miRNA:   3'- aCAGccUGCUGCA-GCACGCGU--UCGag -5'
24081 5' -55.8 NC_005262.1 + 21395 0.68 0.588569
Target:  5'- ---aGGAUGACGUCuUGCGgcacuggucCGAGCUCg -3'
miRNA:   3'- acagCCUGCUGCAGcACGC---------GUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 46245 0.68 0.588569
Target:  5'- -aUCGGuauCGGCG-CGUucGCGCAagGGCUCa -3'
miRNA:   3'- acAGCCu--GCUGCaGCA--CGCGU--UCGAG- -5'
24081 5' -55.8 NC_005262.1 + 5072 0.69 0.556459
Target:  5'- --cCGcGGCGGCGgcgCGUGCGaCcGGCUCg -3'
miRNA:   3'- acaGC-CUGCUGCa--GCACGC-GuUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 20377 0.69 0.545863
Target:  5'- -aUCGGAUaGACGUUGaGCGCcgcgccguuGAGCUCg -3'
miRNA:   3'- acAGCCUG-CUGCAGCaCGCG---------UUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 51351 0.69 0.545863
Target:  5'- cGUCucGACGAgGaUCGUGCGCcgcaucGGCUCg -3'
miRNA:   3'- aCAGc-CUGCUgC-AGCACGCGu-----UCGAG- -5'
24081 5' -55.8 NC_005262.1 + 42375 0.69 0.545863
Target:  5'- cG-CGGACGuCGgcCGU-CGCGAGCUCg -3'
miRNA:   3'- aCaGCCUGCuGCa-GCAcGCGUUCGAG- -5'
24081 5' -55.8 NC_005262.1 + 16630 0.69 0.535332
Target:  5'- --cUGGGCGAuauCGUCGUgcuGCGCGAGCa- -3'
miRNA:   3'- acaGCCUGCU---GCAGCA---CGCGUUCGag -5'
24081 5' -55.8 NC_005262.1 + 33380 0.69 0.535332
Target:  5'- gUGUCGaGCGcCGUCcaGCGCAcgcGGCUCg -3'
miRNA:   3'- -ACAGCcUGCuGCAGcaCGCGU---UCGAG- -5'
24081 5' -55.8 NC_005262.1 + 30764 0.69 0.524873
Target:  5'- cGUCGGGCGguACGUCagcaucagGCGCA-GCUUg -3'
miRNA:   3'- aCAGCCUGC--UGCAGca------CGCGUuCGAG- -5'
24081 5' -55.8 NC_005262.1 + 27062 0.69 0.524873
Target:  5'- cG-CGcuACG-CGuUCGUGCGCGAGCUCg -3'
miRNA:   3'- aCaGCc-UGCuGC-AGCACGCGUUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.