miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24082 3' -57.8 NC_005262.1 + 30764 0.66 0.592689
Target:  5'- cGUCgGGCGguACGUCagcaucAGGCGCaGCUUg -3'
miRNA:   3'- -UAG-UCGCguUGCAGc-----UCCGCGaCGAG- -5'
24082 3' -57.8 NC_005262.1 + 23793 0.66 0.592689
Target:  5'- uUCAGCGUgaugagcgagcGAUGUgCGAGGgGUUGgUCa -3'
miRNA:   3'- uAGUCGCG-----------UUGCA-GCUCCgCGACgAG- -5'
24082 3' -57.8 NC_005262.1 + 16399 0.66 0.592689
Target:  5'- uUCuGCGCGucGCGcUCGAGGuCGCccucgUGCUUg -3'
miRNA:   3'- uAGuCGCGU--UGC-AGCUCC-GCG-----ACGAG- -5'
24082 3' -57.8 NC_005262.1 + 8887 0.66 0.592689
Target:  5'- cGUCAgGUGCGAgcCGUCGAacuGGCGCgGCg- -3'
miRNA:   3'- -UAGU-CGCGUU--GCAGCU---CCGCGaCGag -5'
24082 3' -57.8 NC_005262.1 + 11639 0.66 0.592689
Target:  5'- cAUCGGCucgGCGGCGccggCGucGCGCUGCa- -3'
miRNA:   3'- -UAGUCG---CGUUGCa---GCucCGCGACGag -5'
24082 3' -57.8 NC_005262.1 + 33323 0.66 0.592689
Target:  5'- aGUCGGaCGCAacuGCGUCGcuGCGCgGCa- -3'
miRNA:   3'- -UAGUC-GCGU---UGCAGCucCGCGaCGag -5'
24082 3' -57.8 NC_005262.1 + 32898 0.66 0.591604
Target:  5'- cGUCGGCcaagccgGCGGCGUCGcacGCGCgacGCUCc -3'
miRNA:   3'- -UAGUCG-------CGUUGCAGCuc-CGCGa--CGAG- -5'
24082 3' -57.8 NC_005262.1 + 18695 0.66 0.589435
Target:  5'- uAUCGGCugGCAcggacuuccgccagGCGUCaAGGCGCUcCUCa -3'
miRNA:   3'- -UAGUCG--CGU--------------UGCAGcUCCGCGAcGAG- -5'
24082 3' -57.8 NC_005262.1 + 11963 0.66 0.581856
Target:  5'- uUCAGCacuucGCGACGUCGGccGCGCUGaagUCg -3'
miRNA:   3'- uAGUCG-----CGUUGCAGCUc-CGCGACg--AG- -5'
24082 3' -57.8 NC_005262.1 + 13463 0.66 0.581856
Target:  5'- --gGGCGCuuCGUCcugcgcggcGGGCGCUGCg- -3'
miRNA:   3'- uagUCGCGuuGCAGc--------UCCGCGACGag -5'
24082 3' -57.8 NC_005262.1 + 15269 0.66 0.581856
Target:  5'- cAUCgAGaCGCGAUugcagGUCGAGcGCGCUGUUa -3'
miRNA:   3'- -UAG-UC-GCGUUG-----CAGCUC-CGCGACGAg -5'
24082 3' -57.8 NC_005262.1 + 39345 0.66 0.571064
Target:  5'- -gCAGCGCcauCGaUCG-GGCGUgacgGCUCa -3'
miRNA:   3'- uaGUCGCGuu-GC-AGCuCCGCGa---CGAG- -5'
24082 3' -57.8 NC_005262.1 + 35578 0.66 0.560321
Target:  5'- --gAGCGCgAAUGUUGugcucGGCGCggGCUCg -3'
miRNA:   3'- uagUCGCG-UUGCAGCu----CCGCGa-CGAG- -5'
24082 3' -57.8 NC_005262.1 + 25073 0.66 0.560321
Target:  5'- -cCAGCGCugAGCGUCG-GGUauuuGCUGCcuUCg -3'
miRNA:   3'- uaGUCGCG--UUGCAGCuCCG----CGACG--AG- -5'
24082 3' -57.8 NC_005262.1 + 63087 0.66 0.560321
Target:  5'- ---uGCgGCGGCGUgCaAGGCGCUGCUg -3'
miRNA:   3'- uaguCG-CGUUGCA-GcUCCGCGACGAg -5'
24082 3' -57.8 NC_005262.1 + 36530 0.66 0.560321
Target:  5'- gGUCGGCGCGGCGacugggauuaUCGGGcgcacgauccucGCGgaaCUGCUCg -3'
miRNA:   3'- -UAGUCGCGUUGC----------AGCUC------------CGC---GACGAG- -5'
24082 3' -57.8 NC_005262.1 + 22380 0.66 0.560321
Target:  5'- aGUCGGCGCAua--CGAGGUGCcgGCg- -3'
miRNA:   3'- -UAGUCGCGUugcaGCUCCGCGa-CGag -5'
24082 3' -57.8 NC_005262.1 + 54551 0.66 0.553902
Target:  5'- -cCGGCcaGCGACGUcgccgcguucgcgagCGAGGCGCUGaaCg -3'
miRNA:   3'- uaGUCG--CGUUGCA---------------GCUCCGCGACgaG- -5'
24082 3' -57.8 NC_005262.1 + 43205 0.66 0.549635
Target:  5'- -aCAGCccuGCGGCG-CGccgcGCGCUGCUCg -3'
miRNA:   3'- uaGUCG---CGUUGCaGCuc--CGCGACGAG- -5'
24082 3' -57.8 NC_005262.1 + 14451 0.66 0.539012
Target:  5'- cGUCAGCG-AGCG-CGGcGcGCGCcUGCUCg -3'
miRNA:   3'- -UAGUCGCgUUGCaGCU-C-CGCG-ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.