miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24082 5' -59.9 NC_005262.1 + 53509 0.66 0.524894
Target:  5'- aGAcGCCGCaGGGgCCGGCCcaGAUAa- -3'
miRNA:   3'- gCUuCGGCGaCCCgGGCUGG--CUGUag -5'
24082 5' -59.9 NC_005262.1 + 61688 0.66 0.524894
Target:  5'- aGAAGCCGUgacgaucaGGGCgCG-CCGGguUCg -3'
miRNA:   3'- gCUUCGGCGa-------CCCGgGCuGGCUguAG- -5'
24082 5' -59.9 NC_005262.1 + 17702 0.66 0.524894
Target:  5'- cCGuGGUCGCUGGcccgaacgaGCCCGAgCCGGaaguaGUCg -3'
miRNA:   3'- -GCuUCGGCGACC---------CGGGCU-GGCUg----UAG- -5'
24082 5' -59.9 NC_005262.1 + 11408 0.66 0.524894
Target:  5'- cCGAAGCCGCgccGcGCCgGGCCGcCGa- -3'
miRNA:   3'- -GCUUCGGCGac-C-CGGgCUGGCuGUag -5'
24082 5' -59.9 NC_005262.1 + 10707 0.66 0.514785
Target:  5'- uCGAGGCCGCgc-GCaCgCGGCCGGCGc- -3'
miRNA:   3'- -GCUUCGGCGaccCG-G-GCUGGCUGUag -5'
24082 5' -59.9 NC_005262.1 + 50076 0.66 0.514785
Target:  5'- aCGAAgGCCGCUGcG-CCGACCGAa--- -3'
miRNA:   3'- -GCUU-CGGCGACcCgGGCUGGCUguag -5'
24082 5' -59.9 NC_005262.1 + 61910 0.66 0.514785
Target:  5'- aCGAuacGCCGCaGGGCUgcGCCGGC-UCg -3'
miRNA:   3'- -GCUu--CGGCGaCCCGGgcUGGCUGuAG- -5'
24082 5' -59.9 NC_005262.1 + 58737 0.66 0.514785
Target:  5'- cCGccGCCGC-GGGCCUGcCCGcCgAUCa -3'
miRNA:   3'- -GCuuCGGCGaCCCGGGCuGGCuG-UAG- -5'
24082 5' -59.9 NC_005262.1 + 36322 0.66 0.504756
Target:  5'- gGggGCCGgUGcGCUCG-CCGGCAa- -3'
miRNA:   3'- gCuuCGGCgACcCGGGCuGGCUGUag -5'
24082 5' -59.9 NC_005262.1 + 48477 0.66 0.494812
Target:  5'- -cGAGCCGCgUGGGCacgggCGGCgCGACGg- -3'
miRNA:   3'- gcUUCGGCG-ACCCGg----GCUG-GCUGUag -5'
24082 5' -59.9 NC_005262.1 + 26696 0.66 0.494812
Target:  5'- ---uGCCGUggccGGCCCGAucggUCGACAUCc -3'
miRNA:   3'- gcuuCGGCGac--CCGGGCU----GGCUGUAG- -5'
24082 5' -59.9 NC_005262.1 + 52944 0.66 0.494812
Target:  5'- ---cGCCGcCUGGGCUUcGCCGGCGg- -3'
miRNA:   3'- gcuuCGGC-GACCCGGGcUGGCUGUag -5'
24082 5' -59.9 NC_005262.1 + 16502 0.66 0.484958
Target:  5'- gCGAGGCgcugggcgcugCGCUGGGgCUGACCccgGACAc- -3'
miRNA:   3'- -GCUUCG-----------GCGACCCgGGCUGG---CUGUag -5'
24082 5' -59.9 NC_005262.1 + 49795 0.67 0.475199
Target:  5'- cCGGAcGCCcCUGcaccguccGGCCCGAUCGGCcgCg -3'
miRNA:   3'- -GCUU-CGGcGAC--------CCGGGCUGGCUGuaG- -5'
24082 5' -59.9 NC_005262.1 + 50230 0.67 0.465539
Target:  5'- cCGAAcGCCGCaaGGUgUCGGCCGAgAUCg -3'
miRNA:   3'- -GCUU-CGGCGacCCG-GGCUGGCUgUAG- -5'
24082 5' -59.9 NC_005262.1 + 57475 0.67 0.465539
Target:  5'- gGAGGUCGa-GGGCgagaagCCGGCCGACGa- -3'
miRNA:   3'- gCUUCGGCgaCCCG------GGCUGGCUGUag -5'
24082 5' -59.9 NC_005262.1 + 30941 0.67 0.455981
Target:  5'- uCGgcGCCGCacgUGcGGgCCGaaaccuugucGCCGACGUCg -3'
miRNA:   3'- -GCuuCGGCG---AC-CCgGGC----------UGGCUGUAG- -5'
24082 5' -59.9 NC_005262.1 + 35816 0.67 0.446531
Target:  5'- gCGAacAGCaucaUGGGCCgGAgCGGCGUCg -3'
miRNA:   3'- -GCU--UCGgcg-ACCCGGgCUgGCUGUAG- -5'
24082 5' -59.9 NC_005262.1 + 50006 0.68 0.418852
Target:  5'- uGAAGCCGCgccGGcGCCC-ACCGAa--- -3'
miRNA:   3'- gCUUCGGCGa--CC-CGGGcUGGCUguag -5'
24082 5' -59.9 NC_005262.1 + 22144 0.68 0.418852
Target:  5'- aCGgcGCCGCcGGaaacaaCCUGACCGACAc- -3'
miRNA:   3'- -GCuuCGGCGaCCc-----GGGCUGGCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.