miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24083 5' -50.6 NC_005262.1 + 30635 0.66 0.945246
Target:  5'- cGAcgCUCGGCaaGGUGCccgcgucGGACAACg -3'
miRNA:   3'- uCUaaGAGCUGcgCCACGa------CUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 58041 0.66 0.945246
Target:  5'- cGGAUggccgCGAgGCcGUGCUGAACAu- -3'
miRNA:   3'- -UCUAaga--GCUgCGcCACGACUUGUug -5'
24083 5' -50.6 NC_005262.1 + 52370 0.66 0.934893
Target:  5'- gGGAcgCUgGACGCGuacCUGAGCAACc -3'
miRNA:   3'- -UCUaaGAgCUGCGCcacGACUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 7670 0.67 0.903923
Target:  5'- cGGGUcgCUCGGCGCGGU-CgGGuCGACg -3'
miRNA:   3'- -UCUAa-GAGCUGCGCCAcGaCUuGUUG- -5'
24083 5' -50.6 NC_005262.1 + 59012 0.67 0.896864
Target:  5'- ----cUUCGAccgucugcaagcCGCGGUGCaGGACAACa -3'
miRNA:   3'- ucuaaGAGCU------------GCGCCACGaCUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 59880 0.68 0.857458
Target:  5'- ------aCGAUGgGGUGCUGAACAc- -3'
miRNA:   3'- ucuaagaGCUGCgCCACGACUUGUug -5'
24083 5' -50.6 NC_005262.1 + 30641 0.7 0.771763
Target:  5'- ---aUCUCGACGaCGGUGCcGcccuuACGACg -3'
miRNA:   3'- ucuaAGAGCUGC-GCCACGaCu----UGUUG- -5'
24083 5' -50.6 NC_005262.1 + 30668 0.71 0.729227
Target:  5'- cGGAca-UCGACaGCGGacGCUGGACGGCg -3'
miRNA:   3'- -UCUaagAGCUG-CGCCa-CGACUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 38270 0.71 0.711709
Target:  5'- cGGAcgUCgCGACGCGGaUGCUgcuguuguugugggcGAACAACa -3'
miRNA:   3'- -UCUa-AGaGCUGCGCC-ACGA---------------CUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 39034 0.72 0.673843
Target:  5'- ----gCUCGcCGCGGUGCUGAAUc-- -3'
miRNA:   3'- ucuaaGAGCuGCGCCACGACUUGuug -5'
24083 5' -50.6 NC_005262.1 + 53559 0.73 0.628711
Target:  5'- gAGAUggugCUCGGCGCGcacgcGCUGAccgGCAGCa -3'
miRNA:   3'- -UCUAa---GAGCUGCGCca---CGACU---UGUUG- -5'
24083 5' -50.6 NC_005262.1 + 12432 0.74 0.572434
Target:  5'- cGGcgUCgcggaCGGCGCGGUGCcGAGCuGCa -3'
miRNA:   3'- -UCuaAGa----GCUGCGCCACGaCUUGuUG- -5'
24083 5' -50.6 NC_005262.1 + 27112 0.76 0.434362
Target:  5'- uGGUUCUaCGACGCcGaGCUGGACGACg -3'
miRNA:   3'- uCUAAGA-GCUGCGcCaCGACUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 32756 0.77 0.40525
Target:  5'- uGAg---CGACGCGGUGCUGAucgcCGACa -3'
miRNA:   3'- uCUaagaGCUGCGCCACGACUu---GUUG- -5'
24083 5' -50.6 NC_005262.1 + 15150 0.78 0.359559
Target:  5'- cGGcgUCgagUCGGCGCGGaUGUUGGACGGCa -3'
miRNA:   3'- -UCuaAG---AGCUGCGCC-ACGACUUGUUG- -5'
24083 5' -50.6 NC_005262.1 + 54695 1.09 0.003256
Target:  5'- cAGAUUCUCGACGCGGUGCUGAACAACc -3'
miRNA:   3'- -UCUAAGAGCUGCGCCACGACUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.