miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 22607 0.66 0.882056
Target:  5'- aGCGGucGCCGGgcGCGCacGCgAUCg- -3'
miRNA:   3'- gCGCUuuUGGUCuuCGCG--CGgUAGac -5'
24084 3' -52.6 NC_005262.1 + 25557 0.66 0.874284
Target:  5'- cCGCGcucccAACCAGAcGGCa-GCCGUCUGc -3'
miRNA:   3'- -GCGCuu---UUGGUCU-UCGcgCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 17631 0.66 0.873493
Target:  5'- gCGCGAGcucgccgagcagcAGgCAGAgaucgcccgccAGCGCGCCGagCUGg -3'
miRNA:   3'- -GCGCUU-------------UUgGUCU-----------UCGCGCGGUa-GAC- -5'
24084 3' -52.6 NC_005262.1 + 9497 0.66 0.866255
Target:  5'- gGCGGcucauguuCgAGAGGCGCGCCAcgUCg- -3'
miRNA:   3'- gCGCUuuu-----GgUCUUCGCGCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 16571 0.66 0.857977
Target:  5'- cCGCGGAuGCCgAGcAGGCGCGUgugCUGg -3'
miRNA:   3'- -GCGCUUuUGG-UC-UUCGCGCGguaGAC- -5'
24084 3' -52.6 NC_005262.1 + 14694 0.66 0.857977
Target:  5'- uCGCGAGcACCAu--GCccgGCGCCAUCg- -3'
miRNA:   3'- -GCGCUUuUGGUcuuCG---CGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 15276 0.66 0.857977
Target:  5'- aCGCGAuuGCaGGucGAGCGCGCUGUUa- -3'
miRNA:   3'- -GCGCUuuUGgUC--UUCGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 29141 0.66 0.857977
Target:  5'- aGCGGucgucGAGCCAGucGAGCGaCGCCGggUCg- -3'
miRNA:   3'- gCGCU-----UUUGGUC--UUCGC-GCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 59622 0.66 0.857977
Target:  5'- gGCGAgaaGAACCuc--GCGCGCCAgUCUc -3'
miRNA:   3'- gCGCU---UUUGGucuuCGCGCGGU-AGAc -5'
24084 3' -52.6 NC_005262.1 + 46373 0.66 0.857977
Target:  5'- aCGCGAGGACgCAaucaaggccGAacaGGCGCGCCucgucgggCUGg -3'
miRNA:   3'- -GCGCUUUUG-GU---------CU---UCGCGCGGua------GAC- -5'
24084 3' -52.6 NC_005262.1 + 58434 0.66 0.857977
Target:  5'- aGUGGuauGACCAGAuggcgaucaAGgGCGUCAUCa- -3'
miRNA:   3'- gCGCUu--UUGGUCU---------UCgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 31005 0.66 0.849455
Target:  5'- aCGCGAugGCC---GGCGCGCCGc--- -3'
miRNA:   3'- -GCGCUuuUGGucuUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 17974 0.67 0.840701
Target:  5'- aCGC-AGcGCCGGAAGUGCGCaCGUUc- -3'
miRNA:   3'- -GCGcUUuUGGUCUUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 50108 0.67 0.840701
Target:  5'- gCGCGAacagAAGCCGGccGaGCGCUcgCUGa -3'
miRNA:   3'- -GCGCU----UUUGGUCuuCgCGCGGuaGAC- -5'
24084 3' -52.6 NC_005262.1 + 24864 0.67 0.831721
Target:  5'- uGCGAAAACgaCAGA---GCGCCAUCg- -3'
miRNA:   3'- gCGCUUUUG--GUCUucgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 15568 0.67 0.831721
Target:  5'- aGCGAgagcaggagGAGCUGGAGGCGCGCgCGc--- -3'
miRNA:   3'- gCGCU---------UUUGGUCUUCGCGCG-GUagac -5'
24084 3' -52.6 NC_005262.1 + 11635 0.67 0.822525
Target:  5'- gGCGucGAGGCCGGGGuaguuGCGCGCCGcCUc -3'
miRNA:   3'- gCGC--UUUUGGUCUU-----CGCGCGGUaGAc -5'
24084 3' -52.6 NC_005262.1 + 57624 0.67 0.822525
Target:  5'- cCGCG-AGGCgCAGGAGCGCGUgAcgaUCUc -3'
miRNA:   3'- -GCGCuUUUG-GUCUUCGCGCGgU---AGAc -5'
24084 3' -52.6 NC_005262.1 + 46828 0.67 0.822525
Target:  5'- gCGCGcucGCCgAGAaaAGCGCGCCGagcgugCUGg -3'
miRNA:   3'- -GCGCuuuUGG-UCU--UCGCGCGGUa-----GAC- -5'
24084 3' -52.6 NC_005262.1 + 39165 0.67 0.813124
Target:  5'- aGCGGuucGCU-GAAGCGCGCUggcaauaucGUCUGg -3'
miRNA:   3'- gCGCUuu-UGGuCUUCGCGCGG---------UAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.