Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24084 | 3' | -52.6 | NC_005262.1 | + | 15276 | 0.66 | 0.857977 |
Target: 5'- aCGCGAuuGCaGGucGAGCGCGCUGUUa- -3' miRNA: 3'- -GCGCUuuUGgUC--UUCGCGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 29141 | 0.66 | 0.857977 |
Target: 5'- aGCGGucgucGAGCCAGucGAGCGaCGCCGggUCg- -3' miRNA: 3'- gCGCU-----UUUGGUC--UUCGC-GCGGU--AGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 58434 | 0.66 | 0.857977 |
Target: 5'- aGUGGuauGACCAGAuggcgaucaAGgGCGUCAUCa- -3' miRNA: 3'- gCGCUu--UUGGUCU---------UCgCGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 14694 | 0.66 | 0.857977 |
Target: 5'- uCGCGAGcACCAu--GCccgGCGCCAUCg- -3' miRNA: 3'- -GCGCUUuUGGUcuuCG---CGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 25557 | 0.66 | 0.874284 |
Target: 5'- cCGCGcucccAACCAGAcGGCa-GCCGUCUGc -3' miRNA: 3'- -GCGCuu---UUGGUCU-UCGcgCGGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 9497 | 0.66 | 0.866255 |
Target: 5'- gGCGGcucauguuCgAGAGGCGCGCCAcgUCg- -3' miRNA: 3'- gCGCUuuu-----GgUCUUCGCGCGGU--AGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 22607 | 0.66 | 0.882056 |
Target: 5'- aGCGGucGCCGGgcGCGCacGCgAUCg- -3' miRNA: 3'- gCGCUuuUGGUCuuCGCG--CGgUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 46373 | 0.66 | 0.857977 |
Target: 5'- aCGCGAGGACgCAaucaaggccGAacaGGCGCGCCucgucgggCUGg -3' miRNA: 3'- -GCGCUUUUG-GU---------CU---UCGCGCGGua------GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 17631 | 0.66 | 0.873493 |
Target: 5'- gCGCGAGcucgccgagcagcAGgCAGAgaucgcccgccAGCGCGCCGagCUGg -3' miRNA: 3'- -GCGCUU-------------UUgGUCU-----------UCGCGCGGUa-GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 59622 | 0.66 | 0.857977 |
Target: 5'- gGCGAgaaGAACCuc--GCGCGCCAgUCUc -3' miRNA: 3'- gCGCU---UUUGGucuuCGCGCGGU-AGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 16571 | 0.66 | 0.857977 |
Target: 5'- cCGCGGAuGCCgAGcAGGCGCGUgugCUGg -3' miRNA: 3'- -GCGCUUuUGG-UC-UUCGCGCGguaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 31005 | 0.66 | 0.849455 |
Target: 5'- aCGCGAugGCC---GGCGCGCCGc--- -3' miRNA: 3'- -GCGCUuuUGGucuUCGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 24864 | 0.67 | 0.831721 |
Target: 5'- uGCGAAAACgaCAGA---GCGCCAUCg- -3' miRNA: 3'- gCGCUUUUG--GUCUucgCGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 57624 | 0.67 | 0.822525 |
Target: 5'- cCGCG-AGGCgCAGGAGCGCGUgAcgaUCUc -3' miRNA: 3'- -GCGCuUUUG-GUCUUCGCGCGgU---AGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 11635 | 0.67 | 0.822525 |
Target: 5'- gGCGucGAGGCCGGGGuaguuGCGCGCCGcCUc -3' miRNA: 3'- gCGC--UUUUGGUCUU-----CGCGCGGUaGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 46828 | 0.67 | 0.822525 |
Target: 5'- gCGCGcucGCCgAGAaaAGCGCGCCGagcgugCUGg -3' miRNA: 3'- -GCGCuuuUGG-UCU--UCGCGCGGUa-----GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 50108 | 0.67 | 0.840701 |
Target: 5'- gCGCGAacagAAGCCGGccGaGCGCUcgCUGa -3' miRNA: 3'- -GCGCU----UUUGGUCuuCgCGCGGuaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 17974 | 0.67 | 0.840701 |
Target: 5'- aCGC-AGcGCCGGAAGUGCGCaCGUUc- -3' miRNA: 3'- -GCGcUUuUGGUCUUCGCGCG-GUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 15568 | 0.67 | 0.831721 |
Target: 5'- aGCGAgagcaggagGAGCUGGAGGCGCGCgCGc--- -3' miRNA: 3'- gCGCU---------UUUGGUCUUCGCGCG-GUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 39165 | 0.67 | 0.813124 |
Target: 5'- aGCGGuucGCU-GAAGCGCGCUggcaauaucGUCUGg -3' miRNA: 3'- gCGCUuu-UGGuCUUCGCGCGG---------UAGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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