Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24084 | 3' | -52.6 | NC_005262.1 | + | 54963 | 1.1 | 0.001887 |
Target: 5'- gCGCGAAAACCAGAAGCGCGCCAUCUGg -3' miRNA: 3'- -GCGCUUUUGGUCUUCGCGCGGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 30135 | 0.78 | 0.251129 |
Target: 5'- aCGCGgcGACCAgcGAGGCGCGCuCGUCa- -3' miRNA: 3'- -GCGCuuUUGGU--CUUCGCGCG-GUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 4861 | 0.76 | 0.332101 |
Target: 5'- gCGCGccGACCgAGAAgcGCGCGCCAUCg- -3' miRNA: 3'- -GCGCuuUUGG-UCUU--CGCGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 19542 | 0.75 | 0.374785 |
Target: 5'- gCGCGucAGCCAGuGGCGCgaGCCAUCg- -3' miRNA: 3'- -GCGCuuUUGGUCuUCGCG--CGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 1536 | 0.73 | 0.501655 |
Target: 5'- gCGUGAAcagcGCCAGcguuGCGCGaCCAUCUGc -3' miRNA: 3'- -GCGCUUu---UGGUCuu--CGCGC-GGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 45895 | 0.72 | 0.566282 |
Target: 5'- cCGCGGGcagaaggauccGACCGGAugcGCGCGCCgAUCa- -3' miRNA: 3'- -GCGCUU-----------UUGGUCUu--CGCGCGG-UAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 10483 | 0.72 | 0.522879 |
Target: 5'- aGCGgcGACCAGcAGCaGCGCCAgcaUGg -3' miRNA: 3'- gCGCuuUUGGUCuUCG-CGCGGUag-AC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 12143 | 0.72 | 0.565184 |
Target: 5'- gCGCugGAGAGCCAGGuuucgaaccugaaGGcCGCGCUGUCUGc -3' miRNA: 3'- -GCG--CUUUUGGUCU-------------UC-GCGCGGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 10859 | 0.72 | 0.522879 |
Target: 5'- gGCGAAGcCCAGGcGGCGCagGCCGUCg- -3' miRNA: 3'- gCGCUUUuGGUCU-UCGCG--CGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 27802 | 0.71 | 0.620577 |
Target: 5'- gCGUGAAcuggaucaucgguAGCgAGAAGCGCgGCCgGUCUGa -3' miRNA: 3'- -GCGCUU-------------UUGgUCUUCGCG-CGG-UAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 60749 | 0.71 | 0.610553 |
Target: 5'- gGCGAAGGCUGGGAGaCGCGCUcgaagaacuucAUCUu -3' miRNA: 3'- gCGCUUUUGGUCUUC-GCGCGG-----------UAGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 13005 | 0.71 | 0.610553 |
Target: 5'- aCGUGGGuguacGCgCAGGAGCGCGCCAa--- -3' miRNA: 3'- -GCGCUUu----UG-GUCUUCGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 61589 | 0.7 | 0.643988 |
Target: 5'- aCGCGGAcaagacgcucucGACCgagcAGAAGCGCGCgCGcCUGa -3' miRNA: 3'- -GCGCUU------------UUGG----UCUUCGCGCG-GUaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 10099 | 0.7 | 0.677321 |
Target: 5'- aCGCG---GCCGGGuucuGCGCGCCcggCUGa -3' miRNA: 3'- -GCGCuuuUGGUCUu---CGCGCGGua-GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 32850 | 0.69 | 0.73184 |
Target: 5'- uGCGGGAAgU---AGCGCGCCGUCa- -3' miRNA: 3'- gCGCUUUUgGucuUCGCGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 49938 | 0.69 | 0.73184 |
Target: 5'- aCGaCGAcgGCCGGu-GCuGCGCCAUCg- -3' miRNA: 3'- -GC-GCUuuUGGUCuuCG-CGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 18145 | 0.69 | 0.742484 |
Target: 5'- uGCGccucAACCGGGAGCGCGugcCCGcCUGa -3' miRNA: 3'- gCGCuu--UUGGUCUUCGCGC---GGUaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44139 | 0.69 | 0.721094 |
Target: 5'- cCGCGuuccGGCCGGAcgcGCGCGCgAUCg- -3' miRNA: 3'- -GCGCuu--UUGGUCUu--CGCGCGgUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 63184 | 0.69 | 0.721094 |
Target: 5'- uGUGGGugcGCCAGAAGCaGCGCUAUg-- -3' miRNA: 3'- gCGCUUu--UGGUCUUCG-CGCGGUAgac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44030 | 0.69 | 0.710257 |
Target: 5'- uGCGAAAACgaUAGAauGGUGCGCaauUCUGa -3' miRNA: 3'- gCGCUUUUG--GUCU--UCGCGCGgu-AGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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