miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 54963 1.1 0.001887
Target:  5'- gCGCGAAAACCAGAAGCGCGCCAUCUGg -3'
miRNA:   3'- -GCGCUUUUGGUCUUCGCGCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 30135 0.78 0.251129
Target:  5'- aCGCGgcGACCAgcGAGGCGCGCuCGUCa- -3'
miRNA:   3'- -GCGCuuUUGGU--CUUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 4861 0.76 0.332101
Target:  5'- gCGCGccGACCgAGAAgcGCGCGCCAUCg- -3'
miRNA:   3'- -GCGCuuUUGG-UCUU--CGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 19542 0.75 0.374785
Target:  5'- gCGCGucAGCCAGuGGCGCgaGCCAUCg- -3'
miRNA:   3'- -GCGCuuUUGGUCuUCGCG--CGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 1536 0.73 0.501655
Target:  5'- gCGUGAAcagcGCCAGcguuGCGCGaCCAUCUGc -3'
miRNA:   3'- -GCGCUUu---UGGUCuu--CGCGC-GGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 10483 0.72 0.522879
Target:  5'- aGCGgcGACCAGcAGCaGCGCCAgcaUGg -3'
miRNA:   3'- gCGCuuUUGGUCuUCG-CGCGGUag-AC- -5'
24084 3' -52.6 NC_005262.1 + 10859 0.72 0.522879
Target:  5'- gGCGAAGcCCAGGcGGCGCagGCCGUCg- -3'
miRNA:   3'- gCGCUUUuGGUCU-UCGCG--CGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 12143 0.72 0.565184
Target:  5'- gCGCugGAGAGCCAGGuuucgaaccugaaGGcCGCGCUGUCUGc -3'
miRNA:   3'- -GCG--CUUUUGGUCU-------------UC-GCGCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 45895 0.72 0.566282
Target:  5'- cCGCGGGcagaaggauccGACCGGAugcGCGCGCCgAUCa- -3'
miRNA:   3'- -GCGCUU-----------UUGGUCUu--CGCGCGG-UAGac -5'
24084 3' -52.6 NC_005262.1 + 60749 0.71 0.610553
Target:  5'- gGCGAAGGCUGGGAGaCGCGCUcgaagaacuucAUCUu -3'
miRNA:   3'- gCGCUUUUGGUCUUC-GCGCGG-----------UAGAc -5'
24084 3' -52.6 NC_005262.1 + 13005 0.71 0.610553
Target:  5'- aCGUGGGuguacGCgCAGGAGCGCGCCAa--- -3'
miRNA:   3'- -GCGCUUu----UG-GUCUUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 27802 0.71 0.620577
Target:  5'- gCGUGAAcuggaucaucgguAGCgAGAAGCGCgGCCgGUCUGa -3'
miRNA:   3'- -GCGCUU-------------UUGgUCUUCGCG-CGG-UAGAC- -5'
24084 3' -52.6 NC_005262.1 + 61589 0.7 0.643988
Target:  5'- aCGCGGAcaagacgcucucGACCgagcAGAAGCGCGCgCGcCUGa -3'
miRNA:   3'- -GCGCUU------------UUGG----UCUUCGCGCG-GUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 10099 0.7 0.677321
Target:  5'- aCGCG---GCCGGGuucuGCGCGCCcggCUGa -3'
miRNA:   3'- -GCGCuuuUGGUCUu---CGCGCGGua-GAC- -5'
24084 3' -52.6 NC_005262.1 + 1062 0.69 0.688359
Target:  5'- gGCGcuGACCGccAGCGCGCCgAUCa- -3'
miRNA:   3'- gCGCuuUUGGUcuUCGCGCGG-UAGac -5'
24084 3' -52.6 NC_005262.1 + 26921 0.69 0.709169
Target:  5'- gCGCGAcgaucccGAGCCGGAuuCGCGCCuAUCc- -3'
miRNA:   3'- -GCGCU-------UUUGGUCUucGCGCGG-UAGac -5'
24084 3' -52.6 NC_005262.1 + 44030 0.69 0.710257
Target:  5'- uGCGAAAACgaUAGAauGGUGCGCaauUCUGa -3'
miRNA:   3'- gCGCUUUUG--GUCU--UCGCGCGgu-AGAC- -5'
24084 3' -52.6 NC_005262.1 + 51844 0.69 0.710257
Target:  5'- gCGCGAAGugCuGAAGCGCGgCGc--- -3'
miRNA:   3'- -GCGCUUUugGuCUUCGCGCgGUagac -5'
24084 3' -52.6 NC_005262.1 + 44139 0.69 0.721094
Target:  5'- cCGCGuuccGGCCGGAcgcGCGCGCgAUCg- -3'
miRNA:   3'- -GCGCuu--UUGGUCUu--CGCGCGgUAGac -5'
24084 3' -52.6 NC_005262.1 + 63184 0.69 0.721094
Target:  5'- uGUGGGugcGCCAGAAGCaGCGCUAUg-- -3'
miRNA:   3'- gCGCUUu--UGGUCUUCG-CGCGGUAgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.