miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 32850 0.69 0.73184
Target:  5'- uGCGGGAAgU---AGCGCGCCGUCa- -3'
miRNA:   3'- gCGCUUUUgGucuUCGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 49938 0.69 0.73184
Target:  5'- aCGaCGAcgGCCGGu-GCuGCGCCAUCg- -3'
miRNA:   3'- -GC-GCUuuUGGUCuuCG-CGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 24933 0.69 0.73184
Target:  5'- aCGCGAucACCAGcguugacgcGAGCGCuGCCGUg-- -3'
miRNA:   3'- -GCGCUuuUGGUC---------UUCGCG-CGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 25058 0.69 0.742484
Target:  5'- aGCGGGAACCAGucGCcaGCGCUgagcGUCg- -3'
miRNA:   3'- gCGCUUUUGGUCuuCG--CGCGG----UAGac -5'
24084 3' -52.6 NC_005262.1 + 61693 0.69 0.742484
Target:  5'- cCGUGAcGAUCAG-GGCGCGCCGg--- -3'
miRNA:   3'- -GCGCUuUUGGUCuUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 18145 0.69 0.742484
Target:  5'- uGCGccucAACCGGGAGCGCGugcCCGcCUGa -3'
miRNA:   3'- gCGCuu--UUGGUCUUCGCGC---GGUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 55841 0.68 0.753013
Target:  5'- uCGCGAAGuuCCAGAA-CGUGCCcgagCUGa -3'
miRNA:   3'- -GCGCUUUu-GGUCUUcGCGCGGua--GAC- -5'
24084 3' -52.6 NC_005262.1 + 4124 0.68 0.753013
Target:  5'- gCGCGAAAGCCGGGcauaaaaaaacGGCgccgcgugGCGCCGUg-- -3'
miRNA:   3'- -GCGCUUUUGGUCU-----------UCG--------CGCGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 43117 0.68 0.753013
Target:  5'- gGCGAcgAGACCcauAAGUGCGCCuggAUCUGu -3'
miRNA:   3'- gCGCU--UUUGGuc-UUCGCGCGG---UAGAC- -5'
24084 3' -52.6 NC_005262.1 + 10735 0.68 0.753013
Target:  5'- uCGCGAucgcGCCGGucAGCGCGUCGUaCUc -3'
miRNA:   3'- -GCGCUuu--UGGUCu-UCGCGCGGUA-GAc -5'
24084 3' -52.6 NC_005262.1 + 17394 0.68 0.763416
Target:  5'- uGCGGGcccAGCCcgacGAGGCGCGCCuguUCg- -3'
miRNA:   3'- gCGCUU---UUGGu---CUUCGCGCGGu--AGac -5'
24084 3' -52.6 NC_005262.1 + 20825 0.68 0.773681
Target:  5'- gCGCGGuuuucAGCCAGucguuGCGCGUCAUgagCUGg -3'
miRNA:   3'- -GCGCUu----UUGGUCuu---CGCGCGGUA---GAC- -5'
24084 3' -52.6 NC_005262.1 + 41452 0.68 0.773681
Target:  5'- aCGCGGAucauagagaaGugCGGGAGCuCGCCA-CUGa -3'
miRNA:   3'- -GCGCUU----------UugGUCUUCGcGCGGUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 31438 0.68 0.773681
Target:  5'- aGCGGAGGCCGuuGGcCGUGCCGUa-- -3'
miRNA:   3'- gCGCUUUUGGUcuUC-GCGCGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 54423 0.68 0.783796
Target:  5'- uCGCGGAGGCgCAGGccgccgcGCGCGCCGa--- -3'
miRNA:   3'- -GCGCUUUUG-GUCUu------CGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 24387 0.68 0.793749
Target:  5'- aCGCc-AAACCGGcGGCGCGCaCGUCc- -3'
miRNA:   3'- -GCGcuUUUGGUCuUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 15762 0.68 0.793749
Target:  5'- uGCGGGcgcGGCCGGcuGCuGCGUgGUCUGg -3'
miRNA:   3'- gCGCUU---UUGGUCuuCG-CGCGgUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 52811 0.67 0.803529
Target:  5'- uGCGAGcgcGACCGGcguucccGGCGCGCCGa--- -3'
miRNA:   3'- gCGCUU---UUGGUCu------UCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 50826 0.67 0.803529
Target:  5'- uCGCGGucgucgacgccGAGCCGGucGGCGaUGCCGUCg- -3'
miRNA:   3'- -GCGCU-----------UUUGGUCu-UCGC-GCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 60144 0.67 0.803529
Target:  5'- cCGCGAGuacAACCGGGAgaagcuGCGCGCCc---- -3'
miRNA:   3'- -GCGCUU---UUGGUCUU------CGCGCGGuagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.