Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24084 | 3' | -52.6 | NC_005262.1 | + | 43117 | 0.68 | 0.753013 |
Target: 5'- gGCGAcgAGACCcauAAGUGCGCCuggAUCUGu -3' miRNA: 3'- gCGCU--UUUGGuc-UUCGCGCGG---UAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44030 | 0.69 | 0.710257 |
Target: 5'- uGCGAAAACgaUAGAauGGUGCGCaauUCUGa -3' miRNA: 3'- gCGCUUUUG--GUCU--UCGCGCGgu-AGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44139 | 0.69 | 0.721094 |
Target: 5'- cCGCGuuccGGCCGGAcgcGCGCGCgAUCg- -3' miRNA: 3'- -GCGCuu--UUGGUCUu--CGCGCGgUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 45895 | 0.72 | 0.566282 |
Target: 5'- cCGCGGGcagaaggauccGACCGGAugcGCGCGCCgAUCa- -3' miRNA: 3'- -GCGCUU-----------UUGGUCUu--CGCGCGG-UAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 46373 | 0.66 | 0.857977 |
Target: 5'- aCGCGAGGACgCAaucaaggccGAacaGGCGCGCCucgucgggCUGg -3' miRNA: 3'- -GCGCUUUUG-GU---------CU---UCGCGCGGua------GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 46828 | 0.67 | 0.822525 |
Target: 5'- gCGCGcucGCCgAGAaaAGCGCGCCGagcgugCUGg -3' miRNA: 3'- -GCGCuuuUGG-UCU--UCGCGCGGUa-----GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 49938 | 0.69 | 0.73184 |
Target: 5'- aCGaCGAcgGCCGGu-GCuGCGCCAUCg- -3' miRNA: 3'- -GC-GCUuuUGGUCuuCG-CGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 50108 | 0.67 | 0.840701 |
Target: 5'- gCGCGAacagAAGCCGGccGaGCGCUcgCUGa -3' miRNA: 3'- -GCGCU----UUUGGUCuuCgCGCGGuaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 50826 | 0.67 | 0.803529 |
Target: 5'- uCGCGGucgucgacgccGAGCCGGucGGCGaUGCCGUCg- -3' miRNA: 3'- -GCGCU-----------UUUGGUCu-UCGC-GCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 51844 | 0.69 | 0.710257 |
Target: 5'- gCGCGAAGugCuGAAGCGCGgCGc--- -3' miRNA: 3'- -GCGCUUUugGuCUUCGCGCgGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 52013 | 0.67 | 0.813124 |
Target: 5'- uGUGAGggUagAGGAGCGCGCCcagGUCg- -3' miRNA: 3'- gCGCUUuuGg-UCUUCGCGCGG---UAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 52811 | 0.67 | 0.803529 |
Target: 5'- uGCGAGcgcGACCGGcguucccGGCGCGCCGa--- -3' miRNA: 3'- gCGCUU---UUGGUCu------UCGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 54423 | 0.68 | 0.783796 |
Target: 5'- uCGCGGAGGCgCAGGccgccgcGCGCGCCGa--- -3' miRNA: 3'- -GCGCUUUUG-GUCUu------CGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 54963 | 1.1 | 0.001887 |
Target: 5'- gCGCGAAAACCAGAAGCGCGCCAUCUGg -3' miRNA: 3'- -GCGCUUUUGGUCUUCGCGCGGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 55841 | 0.68 | 0.753013 |
Target: 5'- uCGCGAAGuuCCAGAA-CGUGCCcgagCUGa -3' miRNA: 3'- -GCGCUUUu-GGUCUUcGCGCGGua--GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 57624 | 0.67 | 0.822525 |
Target: 5'- cCGCG-AGGCgCAGGAGCGCGUgAcgaUCUc -3' miRNA: 3'- -GCGCuUUUG-GUCUUCGCGCGgU---AGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 58434 | 0.66 | 0.857977 |
Target: 5'- aGUGGuauGACCAGAuggcgaucaAGgGCGUCAUCa- -3' miRNA: 3'- gCGCUu--UUGGUCU---------UCgCGCGGUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 59622 | 0.66 | 0.857977 |
Target: 5'- gGCGAgaaGAACCuc--GCGCGCCAgUCUc -3' miRNA: 3'- gCGCU---UUUGGucuuCGCGCGGU-AGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 60144 | 0.67 | 0.803529 |
Target: 5'- cCGCGAGuacAACCGGGAgaagcuGCGCGCCc---- -3' miRNA: 3'- -GCGCUU---UUGGUCUU------CGCGCGGuagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 60749 | 0.71 | 0.610553 |
Target: 5'- gGCGAAGGCUGGGAGaCGCGCUcgaagaacuucAUCUu -3' miRNA: 3'- gCGCUUUUGGUCUUC-GCGCGG-----------UAGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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