miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 44139 0.69 0.721094
Target:  5'- cCGCGuuccGGCCGGAcgcGCGCGCgAUCg- -3'
miRNA:   3'- -GCGCuu--UUGGUCUu--CGCGCGgUAGac -5'
24084 3' -52.6 NC_005262.1 + 44030 0.69 0.710257
Target:  5'- uGCGAAAACgaUAGAauGGUGCGCaauUCUGa -3'
miRNA:   3'- gCGCUUUUG--GUCU--UCGCGCGgu-AGAC- -5'
24084 3' -52.6 NC_005262.1 + 43117 0.68 0.753013
Target:  5'- gGCGAcgAGACCcauAAGUGCGCCuggAUCUGu -3'
miRNA:   3'- gCGCU--UUUGGuc-UUCGCGCGG---UAGAC- -5'
24084 3' -52.6 NC_005262.1 + 41452 0.68 0.773681
Target:  5'- aCGCGGAucauagagaaGugCGGGAGCuCGCCA-CUGa -3'
miRNA:   3'- -GCGCUU----------UugGUCUUCGcGCGGUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 39165 0.67 0.813124
Target:  5'- aGCGGuucGCU-GAAGCGCGCUggcaauaucGUCUGg -3'
miRNA:   3'- gCGCUuu-UGGuCUUCGCGCGG---------UAGAC- -5'
24084 3' -52.6 NC_005262.1 + 32850 0.69 0.73184
Target:  5'- uGCGGGAAgU---AGCGCGCCGUCa- -3'
miRNA:   3'- gCGCUUUUgGucuUCGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 31438 0.68 0.773681
Target:  5'- aGCGGAGGCCGuuGGcCGUGCCGUa-- -3'
miRNA:   3'- gCGCUUUUGGUcuUC-GCGCGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 31005 0.66 0.849455
Target:  5'- aCGCGAugGCC---GGCGCGCCGc--- -3'
miRNA:   3'- -GCGCUuuUGGucuUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 30135 0.78 0.251129
Target:  5'- aCGCGgcGACCAgcGAGGCGCGCuCGUCa- -3'
miRNA:   3'- -GCGCuuUUGGU--CUUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 29141 0.66 0.857977
Target:  5'- aGCGGucgucGAGCCAGucGAGCGaCGCCGggUCg- -3'
miRNA:   3'- gCGCU-----UUUGGUC--UUCGC-GCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 27802 0.71 0.620577
Target:  5'- gCGUGAAcuggaucaucgguAGCgAGAAGCGCgGCCgGUCUGa -3'
miRNA:   3'- -GCGCUU-------------UUGgUCUUCGCG-CGG-UAGAC- -5'
24084 3' -52.6 NC_005262.1 + 26921 0.69 0.709169
Target:  5'- gCGCGAcgaucccGAGCCGGAuuCGCGCCuAUCc- -3'
miRNA:   3'- -GCGCU-------UUUGGUCUucGCGCGG-UAGac -5'
24084 3' -52.6 NC_005262.1 + 25557 0.66 0.874284
Target:  5'- cCGCGcucccAACCAGAcGGCa-GCCGUCUGc -3'
miRNA:   3'- -GCGCuu---UUGGUCU-UCGcgCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 25058 0.69 0.742484
Target:  5'- aGCGGGAACCAGucGCcaGCGCUgagcGUCg- -3'
miRNA:   3'- gCGCUUUUGGUCuuCG--CGCGG----UAGac -5'
24084 3' -52.6 NC_005262.1 + 24933 0.69 0.73184
Target:  5'- aCGCGAucACCAGcguugacgcGAGCGCuGCCGUg-- -3'
miRNA:   3'- -GCGCUuuUGGUC---------UUCGCG-CGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 24864 0.67 0.831721
Target:  5'- uGCGAAAACgaCAGA---GCGCCAUCg- -3'
miRNA:   3'- gCGCUUUUG--GUCUucgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 24387 0.68 0.793749
Target:  5'- aCGCc-AAACCGGcGGCGCGCaCGUCc- -3'
miRNA:   3'- -GCGcuUUUGGUCuUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 22607 0.66 0.882056
Target:  5'- aGCGGucGCCGGgcGCGCacGCgAUCg- -3'
miRNA:   3'- gCGCUuuUGGUCuuCGCG--CGgUAGac -5'
24084 3' -52.6 NC_005262.1 + 20825 0.68 0.773681
Target:  5'- gCGCGGuuuucAGCCAGucguuGCGCGUCAUgagCUGg -3'
miRNA:   3'- -GCGCUu----UUGGUCuu---CGCGCGGUA---GAC- -5'
24084 3' -52.6 NC_005262.1 + 19542 0.75 0.374785
Target:  5'- gCGCGucAGCCAGuGGCGCgaGCCAUCg- -3'
miRNA:   3'- -GCGCuuUUGGUCuUCGCG--CGGUAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.