miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 18145 0.69 0.742484
Target:  5'- uGCGccucAACCGGGAGCGCGugcCCGcCUGa -3'
miRNA:   3'- gCGCuu--UUGGUCUUCGCGC---GGUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 17974 0.67 0.840701
Target:  5'- aCGC-AGcGCCGGAAGUGCGCaCGUUc- -3'
miRNA:   3'- -GCGcUUuUGGUCUUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 17631 0.66 0.873493
Target:  5'- gCGCGAGcucgccgagcagcAGgCAGAgaucgcccgccAGCGCGCCGagCUGg -3'
miRNA:   3'- -GCGCUU-------------UUgGUCU-----------UCGCGCGGUa-GAC- -5'
24084 3' -52.6 NC_005262.1 + 17394 0.68 0.763416
Target:  5'- uGCGGGcccAGCCcgacGAGGCGCGCCuguUCg- -3'
miRNA:   3'- gCGCUU---UUGGu---CUUCGCGCGGu--AGac -5'
24084 3' -52.6 NC_005262.1 + 16571 0.66 0.857977
Target:  5'- cCGCGGAuGCCgAGcAGGCGCGUgugCUGg -3'
miRNA:   3'- -GCGCUUuUGG-UC-UUCGCGCGguaGAC- -5'
24084 3' -52.6 NC_005262.1 + 15762 0.68 0.793749
Target:  5'- uGCGGGcgcGGCCGGcuGCuGCGUgGUCUGg -3'
miRNA:   3'- gCGCUU---UUGGUCuuCG-CGCGgUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 15568 0.67 0.831721
Target:  5'- aGCGAgagcaggagGAGCUGGAGGCGCGCgCGc--- -3'
miRNA:   3'- gCGCU---------UUUGGUCUUCGCGCG-GUagac -5'
24084 3' -52.6 NC_005262.1 + 15276 0.66 0.857977
Target:  5'- aCGCGAuuGCaGGucGAGCGCGCUGUUa- -3'
miRNA:   3'- -GCGCUuuUGgUC--UUCGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 14694 0.66 0.857977
Target:  5'- uCGCGAGcACCAu--GCccgGCGCCAUCg- -3'
miRNA:   3'- -GCGCUUuUGGUcuuCG---CGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 13005 0.71 0.610553
Target:  5'- aCGUGGGuguacGCgCAGGAGCGCGCCAa--- -3'
miRNA:   3'- -GCGCUUu----UG-GUCUUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 12143 0.72 0.565184
Target:  5'- gCGCugGAGAGCCAGGuuucgaaccugaaGGcCGCGCUGUCUGc -3'
miRNA:   3'- -GCG--CUUUUGGUCU-------------UC-GCGCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 11635 0.67 0.822525
Target:  5'- gGCGucGAGGCCGGGGuaguuGCGCGCCGcCUc -3'
miRNA:   3'- gCGC--UUUUGGUCUU-----CGCGCGGUaGAc -5'
24084 3' -52.6 NC_005262.1 + 10859 0.72 0.522879
Target:  5'- gGCGAAGcCCAGGcGGCGCagGCCGUCg- -3'
miRNA:   3'- gCGCUUUuGGUCU-UCGCG--CGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 10735 0.68 0.753013
Target:  5'- uCGCGAucgcGCCGGucAGCGCGUCGUaCUc -3'
miRNA:   3'- -GCGCUuu--UGGUCu-UCGCGCGGUA-GAc -5'
24084 3' -52.6 NC_005262.1 + 10483 0.72 0.522879
Target:  5'- aGCGgcGACCAGcAGCaGCGCCAgcaUGg -3'
miRNA:   3'- gCGCuuUUGGUCuUCG-CGCGGUag-AC- -5'
24084 3' -52.6 NC_005262.1 + 10099 0.7 0.677321
Target:  5'- aCGCG---GCCGGGuucuGCGCGCCcggCUGa -3'
miRNA:   3'- -GCGCuuuUGGUCUu---CGCGCGGua-GAC- -5'
24084 3' -52.6 NC_005262.1 + 9497 0.66 0.866255
Target:  5'- gGCGGcucauguuCgAGAGGCGCGCCAcgUCg- -3'
miRNA:   3'- gCGCUuuu-----GgUCUUCGCGCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 8825 0.67 0.813124
Target:  5'- cCGC----GCCAGAuGGCGCGCU-UCUGg -3'
miRNA:   3'- -GCGcuuuUGGUCU-UCGCGCGGuAGAC- -5'
24084 3' -52.6 NC_005262.1 + 4861 0.76 0.332101
Target:  5'- gCGCGccGACCgAGAAgcGCGCGCCAUCg- -3'
miRNA:   3'- -GCGCuuUUGG-UCUU--CGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 4124 0.68 0.753013
Target:  5'- gCGCGAAAGCCGGGcauaaaaaaacGGCgccgcgugGCGCCGUg-- -3'
miRNA:   3'- -GCGCUUUUGGUCU-----------UCG--------CGCGGUAgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.