Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24084 | 3' | -52.6 | NC_005262.1 | + | 39165 | 0.67 | 0.813124 |
Target: 5'- aGCGGuucGCU-GAAGCGCGCUggcaauaucGUCUGg -3' miRNA: 3'- gCGCUuu-UGGuCUUCGCGCGG---------UAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 63184 | 0.69 | 0.721094 |
Target: 5'- uGUGGGugcGCCAGAAGCaGCGCUAUg-- -3' miRNA: 3'- gCGCUUu--UGGUCUUCG-CGCGGUAgac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44139 | 0.69 | 0.721094 |
Target: 5'- cCGCGuuccGGCCGGAcgcGCGCGCgAUCg- -3' miRNA: 3'- -GCGCuu--UUGGUCUu--CGCGCGgUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 18145 | 0.69 | 0.742484 |
Target: 5'- uGCGccucAACCGGGAGCGCGugcCCGcCUGa -3' miRNA: 3'- gCGCuu--UUGGUCUUCGCGC---GGUaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 61693 | 0.69 | 0.742484 |
Target: 5'- cCGUGAcGAUCAG-GGCGCGCCGg--- -3' miRNA: 3'- -GCGCUuUUGGUCuUCGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 4124 | 0.68 | 0.753013 |
Target: 5'- gCGCGAAAGCCGGGcauaaaaaaacGGCgccgcgugGCGCCGUg-- -3' miRNA: 3'- -GCGCUUUUGGUCU-----------UCG--------CGCGGUAgac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 55841 | 0.68 | 0.753013 |
Target: 5'- uCGCGAAGuuCCAGAA-CGUGCCcgagCUGa -3' miRNA: 3'- -GCGCUUUu-GGUCUUcGCGCGGua--GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 54423 | 0.68 | 0.783796 |
Target: 5'- uCGCGGAGGCgCAGGccgccgcGCGCGCCGa--- -3' miRNA: 3'- -GCGCUUUUG-GUCUu------CGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 24387 | 0.68 | 0.793749 |
Target: 5'- aCGCc-AAACCGGcGGCGCGCaCGUCc- -3' miRNA: 3'- -GCGcuUUUGGUCuUCGCGCG-GUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44030 | 0.69 | 0.710257 |
Target: 5'- uGCGAAAACgaUAGAauGGUGCGCaauUCUGa -3' miRNA: 3'- gCGCUUUUG--GUCU--UCGCGCGgu-AGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 51844 | 0.69 | 0.710257 |
Target: 5'- gCGCGAAGugCuGAAGCGCGgCGc--- -3' miRNA: 3'- -GCGCUUUugGuCUUCGCGCgGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 26921 | 0.69 | 0.709169 |
Target: 5'- gCGCGAcgaucccGAGCCGGAuuCGCGCCuAUCc- -3' miRNA: 3'- -GCGCU-------UUUGGUCUucGCGCGG-UAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 1536 | 0.73 | 0.501655 |
Target: 5'- gCGUGAAcagcGCCAGcguuGCGCGaCCAUCUGc -3' miRNA: 3'- -GCGCUUu---UGGUCuu--CGCGC-GGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 10483 | 0.72 | 0.522879 |
Target: 5'- aGCGgcGACCAGcAGCaGCGCCAgcaUGg -3' miRNA: 3'- gCGCuuUUGGUCuUCG-CGCGGUag-AC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 12143 | 0.72 | 0.565184 |
Target: 5'- gCGCugGAGAGCCAGGuuucgaaccugaaGGcCGCGCUGUCUGc -3' miRNA: 3'- -GCG--CUUUUGGUCU-------------UC-GCGCGGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 45895 | 0.72 | 0.566282 |
Target: 5'- cCGCGGGcagaaggauccGACCGGAugcGCGCGCCgAUCa- -3' miRNA: 3'- -GCGCUU-----------UUGGUCUu--CGCGCGG-UAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 13005 | 0.71 | 0.610553 |
Target: 5'- aCGUGGGuguacGCgCAGGAGCGCGCCAa--- -3' miRNA: 3'- -GCGCUUu----UG-GUCUUCGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 60749 | 0.71 | 0.610553 |
Target: 5'- gGCGAAGGCUGGGAGaCGCGCUcgaagaacuucAUCUu -3' miRNA: 3'- gCGCUUUUGGUCUUC-GCGCGG-----------UAGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 27802 | 0.71 | 0.620577 |
Target: 5'- gCGUGAAcuggaucaucgguAGCgAGAAGCGCgGCCgGUCUGa -3' miRNA: 3'- -GCGCUU-------------UUGgUCUUCGCG-CGG-UAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 61589 | 0.7 | 0.643988 |
Target: 5'- aCGCGGAcaagacgcucucGACCgagcAGAAGCGCGCgCGcCUGa -3' miRNA: 3'- -GCGCUU------------UUGG----UCUUCGCGCG-GUaGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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