miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 45895 0.72 0.566282
Target:  5'- cCGCGGGcagaaggauccGACCGGAugcGCGCGCCgAUCa- -3'
miRNA:   3'- -GCGCUU-----------UUGGUCUu--CGCGCGG-UAGac -5'
24084 3' -52.6 NC_005262.1 + 13005 0.71 0.610553
Target:  5'- aCGUGGGuguacGCgCAGGAGCGCGCCAa--- -3'
miRNA:   3'- -GCGCUUu----UG-GUCUUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 60749 0.71 0.610553
Target:  5'- gGCGAAGGCUGGGAGaCGCGCUcgaagaacuucAUCUu -3'
miRNA:   3'- gCGCUUUUGGUCUUC-GCGCGG-----------UAGAc -5'
24084 3' -52.6 NC_005262.1 + 27802 0.71 0.620577
Target:  5'- gCGUGAAcuggaucaucgguAGCgAGAAGCGCgGCCgGUCUGa -3'
miRNA:   3'- -GCGCUU-------------UUGgUCUUCGCG-CGG-UAGAC- -5'
24084 3' -52.6 NC_005262.1 + 63184 0.69 0.721094
Target:  5'- uGUGGGugcGCCAGAAGCaGCGCUAUg-- -3'
miRNA:   3'- gCGCUUu--UGGUCUUCG-CGCGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 44030 0.69 0.710257
Target:  5'- uGCGAAAACgaUAGAauGGUGCGCaauUCUGa -3'
miRNA:   3'- gCGCUUUUG--GUCU--UCGCGCGgu-AGAC- -5'
24084 3' -52.6 NC_005262.1 + 51844 0.69 0.710257
Target:  5'- gCGCGAAGugCuGAAGCGCGgCGc--- -3'
miRNA:   3'- -GCGCUUUugGuCUUCGCGCgGUagac -5'
24084 3' -52.6 NC_005262.1 + 26921 0.69 0.709169
Target:  5'- gCGCGAcgaucccGAGCCGGAuuCGCGCCuAUCc- -3'
miRNA:   3'- -GCGCU-------UUUGGUCUucGCGCGG-UAGac -5'
24084 3' -52.6 NC_005262.1 + 61589 0.7 0.643988
Target:  5'- aCGCGGAcaagacgcucucGACCgagcAGAAGCGCGCgCGcCUGa -3'
miRNA:   3'- -GCGCUU------------UUGG----UCUUCGCGCG-GUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 11635 0.67 0.822525
Target:  5'- gGCGucGAGGCCGGGGuaguuGCGCGCCGcCUc -3'
miRNA:   3'- gCGC--UUUUGGUCUU-----CGCGCGGUaGAc -5'
24084 3' -52.6 NC_005262.1 + 57624 0.67 0.822525
Target:  5'- cCGCG-AGGCgCAGGAGCGCGUgAcgaUCUc -3'
miRNA:   3'- -GCGCuUUUG-GUCUUCGCGCGgU---AGAc -5'
24084 3' -52.6 NC_005262.1 + 24864 0.67 0.831721
Target:  5'- uGCGAAAACgaCAGA---GCGCCAUCg- -3'
miRNA:   3'- gCGCUUUUG--GUCUucgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 31005 0.66 0.849455
Target:  5'- aCGCGAugGCC---GGCGCGCCGc--- -3'
miRNA:   3'- -GCGCUuuUGGucuUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 29141 0.66 0.857977
Target:  5'- aGCGGucgucGAGCCAGucGAGCGaCGCCGggUCg- -3'
miRNA:   3'- gCGCU-----UUUGGUC--UUCGC-GCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 58434 0.66 0.857977
Target:  5'- aGUGGuauGACCAGAuggcgaucaAGgGCGUCAUCa- -3'
miRNA:   3'- gCGCUu--UUGGUCU---------UCgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 14694 0.66 0.857977
Target:  5'- uCGCGAGcACCAu--GCccgGCGCCAUCg- -3'
miRNA:   3'- -GCGCUUuUGGUcuuCG---CGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 15276 0.66 0.857977
Target:  5'- aCGCGAuuGCaGGucGAGCGCGCUGUUa- -3'
miRNA:   3'- -GCGCUuuUGgUC--UUCGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 9497 0.66 0.866255
Target:  5'- gGCGGcucauguuCgAGAGGCGCGCCAcgUCg- -3'
miRNA:   3'- gCGCUuuu-----GgUCUUCGCGCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 25557 0.66 0.874284
Target:  5'- cCGCGcucccAACCAGAcGGCa-GCCGUCUGc -3'
miRNA:   3'- -GCGCuu---UUGGUCU-UCGcgCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 30135 0.78 0.251129
Target:  5'- aCGCGgcGACCAgcGAGGCGCGCuCGUCa- -3'
miRNA:   3'- -GCGCuuUUGGU--CUUCGCGCG-GUAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.