miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 3' -52.6 NC_005262.1 + 22607 0.66 0.882056
Target:  5'- aGCGGucGCCGGgcGCGCacGCgAUCg- -3'
miRNA:   3'- gCGCUuuUGGUCuuCGCG--CGgUAGac -5'
24084 3' -52.6 NC_005262.1 + 15762 0.68 0.793749
Target:  5'- uGCGGGcgcGGCCGGcuGCuGCGUgGUCUGg -3'
miRNA:   3'- gCGCUU---UUGGUCuuCG-CGCGgUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 31438 0.68 0.773681
Target:  5'- aGCGGAGGCCGuuGGcCGUGCCGUa-- -3'
miRNA:   3'- gCGCUUUUGGUcuUC-GCGCGGUAgac -5'
24084 3' -52.6 NC_005262.1 + 30135 0.78 0.251129
Target:  5'- aCGCGgcGACCAgcGAGGCGCGCuCGUCa- -3'
miRNA:   3'- -GCGCuuUUGGU--CUUCGCGCG-GUAGac -5'
24084 3' -52.6 NC_005262.1 + 14694 0.66 0.857977
Target:  5'- uCGCGAGcACCAu--GCccgGCGCCAUCg- -3'
miRNA:   3'- -GCGCUUuUGGUcuuCG---CGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 58434 0.66 0.857977
Target:  5'- aGUGGuauGACCAGAuggcgaucaAGgGCGUCAUCa- -3'
miRNA:   3'- gCGCUu--UUGGUCU---------UCgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 31005 0.66 0.849455
Target:  5'- aCGCGAugGCC---GGCGCGCCGc--- -3'
miRNA:   3'- -GCGCUuuUGGucuUCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 24864 0.67 0.831721
Target:  5'- uGCGAAAACgaCAGA---GCGCCAUCg- -3'
miRNA:   3'- gCGCUUUUG--GUCUucgCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 8825 0.67 0.813124
Target:  5'- cCGC----GCCAGAuGGCGCGCU-UCUGg -3'
miRNA:   3'- -GCGcuuuUGGUCU-UCGCGCGGuAGAC- -5'
24084 3' -52.6 NC_005262.1 + 52811 0.67 0.803529
Target:  5'- uGCGAGcgcGACCGGcguucccGGCGCGCCGa--- -3'
miRNA:   3'- gCGCUU---UUGGUCu------UCGCGCGGUagac -5'
24084 3' -52.6 NC_005262.1 + 52013 0.67 0.813124
Target:  5'- uGUGAGggUagAGGAGCGCGCCcagGUCg- -3'
miRNA:   3'- gCGCUUuuGg-UCUUCGCGCGG---UAGac -5'
24084 3' -52.6 NC_005262.1 + 11635 0.67 0.822525
Target:  5'- gGCGucGAGGCCGGGGuaguuGCGCGCCGcCUc -3'
miRNA:   3'- gCGC--UUUUGGUCUU-----CGCGCGGUaGAc -5'
24084 3' -52.6 NC_005262.1 + 25557 0.66 0.874284
Target:  5'- cCGCGcucccAACCAGAcGGCa-GCCGUCUGc -3'
miRNA:   3'- -GCGCuu---UUGGUCU-UCGcgCGGUAGAC- -5'
24084 3' -52.6 NC_005262.1 + 60144 0.67 0.803529
Target:  5'- cCGCGAGuacAACCGGGAgaagcuGCGCGCCc---- -3'
miRNA:   3'- -GCGCUU---UUGGUCUU------CGCGCGGuagac -5'
24084 3' -52.6 NC_005262.1 + 9497 0.66 0.866255
Target:  5'- gGCGGcucauguuCgAGAGGCGCGCCAcgUCg- -3'
miRNA:   3'- gCGCUuuu-----GgUCUUCGCGCGGU--AGac -5'
24084 3' -52.6 NC_005262.1 + 57624 0.67 0.822525
Target:  5'- cCGCG-AGGCgCAGGAGCGCGUgAcgaUCUc -3'
miRNA:   3'- -GCGCuUUUG-GUCUUCGCGCGgU---AGAc -5'
24084 3' -52.6 NC_005262.1 + 50826 0.67 0.803529
Target:  5'- uCGCGGucgucgacgccGAGCCGGucGGCGaUGCCGUCg- -3'
miRNA:   3'- -GCGCU-----------UUUGGUCu-UCGC-GCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 41452 0.68 0.773681
Target:  5'- aCGCGGAucauagagaaGugCGGGAGCuCGCCA-CUGa -3'
miRNA:   3'- -GCGCUU----------UugGUCUUCGcGCGGUaGAC- -5'
24084 3' -52.6 NC_005262.1 + 15276 0.66 0.857977
Target:  5'- aCGCGAuuGCaGGucGAGCGCGCUGUUa- -3'
miRNA:   3'- -GCGCUuuUGgUC--UUCGCGCGGUAGac -5'
24084 3' -52.6 NC_005262.1 + 29141 0.66 0.857977
Target:  5'- aGCGGucgucGAGCCAGucGAGCGaCGCCGggUCg- -3'
miRNA:   3'- gCGCU-----UUUGGUC--UUCGC-GCGGU--AGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.