Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24084 | 3' | -52.6 | NC_005262.1 | + | 60749 | 0.71 | 0.610553 |
Target: 5'- gGCGAAGGCUGGGAGaCGCGCUcgaagaacuucAUCUu -3' miRNA: 3'- gCGCUUUUGGUCUUC-GCGCGG-----------UAGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 13005 | 0.71 | 0.610553 |
Target: 5'- aCGUGGGuguacGCgCAGGAGCGCGCCAa--- -3' miRNA: 3'- -GCGCUUu----UG-GUCUUCGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 45895 | 0.72 | 0.566282 |
Target: 5'- cCGCGGGcagaaggauccGACCGGAugcGCGCGCCgAUCa- -3' miRNA: 3'- -GCGCUU-----------UUGGUCUu--CGCGCGG-UAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 12143 | 0.72 | 0.565184 |
Target: 5'- gCGCugGAGAGCCAGGuuucgaaccugaaGGcCGCGCUGUCUGc -3' miRNA: 3'- -GCG--CUUUUGGUCU-------------UC-GCGCGGUAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 10483 | 0.72 | 0.522879 |
Target: 5'- aGCGgcGACCAGcAGCaGCGCCAgcaUGg -3' miRNA: 3'- gCGCuuUUGGUCuUCG-CGCGGUag-AC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 44139 | 0.69 | 0.721094 |
Target: 5'- cCGCGuuccGGCCGGAcgcGCGCGCgAUCg- -3' miRNA: 3'- -GCGCuu--UUGGUCUu--CGCGCGgUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 18145 | 0.69 | 0.742484 |
Target: 5'- uGCGccucAACCGGGAGCGCGugcCCGcCUGa -3' miRNA: 3'- gCGCuu--UUGGUCUUCGCGC---GGUaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 59622 | 0.66 | 0.857977 |
Target: 5'- gGCGAgaaGAACCuc--GCGCGCCAgUCUc -3' miRNA: 3'- gCGCU---UUUGGucuuCGCGCGGU-AGAc -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 46373 | 0.66 | 0.857977 |
Target: 5'- aCGCGAGGACgCAaucaaggccGAacaGGCGCGCCucgucgggCUGg -3' miRNA: 3'- -GCGCUUUUG-GU---------CU---UCGCGCGGua------GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 16571 | 0.66 | 0.857977 |
Target: 5'- cCGCGGAuGCCgAGcAGGCGCGUgugCUGg -3' miRNA: 3'- -GCGCUUuUGG-UC-UUCGCGCGguaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 50108 | 0.67 | 0.840701 |
Target: 5'- gCGCGAacagAAGCCGGccGaGCGCUcgCUGa -3' miRNA: 3'- -GCGCU----UUUGGUCuuCgCGCGGuaGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 15568 | 0.67 | 0.831721 |
Target: 5'- aGCGAgagcaggagGAGCUGGAGGCGCGCgCGc--- -3' miRNA: 3'- gCGCU---------UUUGGUCUUCGCGCG-GUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 17974 | 0.67 | 0.840701 |
Target: 5'- aCGC-AGcGCCGGAAGUGCGCaCGUUc- -3' miRNA: 3'- -GCGcUUuUGGUCUUCGCGCG-GUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 46828 | 0.67 | 0.822525 |
Target: 5'- gCGCGcucGCCgAGAaaAGCGCGCCGagcgugCUGg -3' miRNA: 3'- -GCGCuuuUGG-UCU--UCGCGCGGUa-----GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 39165 | 0.67 | 0.813124 |
Target: 5'- aGCGGuucGCU-GAAGCGCGCUggcaauaucGUCUGg -3' miRNA: 3'- gCGCUuu-UGGuCUUCGCGCGG---------UAGAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 24387 | 0.68 | 0.793749 |
Target: 5'- aCGCc-AAACCGGcGGCGCGCaCGUCc- -3' miRNA: 3'- -GCGcuUUUGGUCuUCGCGCG-GUAGac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 54423 | 0.68 | 0.783796 |
Target: 5'- uCGCGGAGGCgCAGGccgccgcGCGCGCCGa--- -3' miRNA: 3'- -GCGCUUUUG-GUCUu------CGCGCGGUagac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 55841 | 0.68 | 0.753013 |
Target: 5'- uCGCGAAGuuCCAGAA-CGUGCCcgagCUGa -3' miRNA: 3'- -GCGCUUUu-GGUCUUcGCGCGGua--GAC- -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 4124 | 0.68 | 0.753013 |
Target: 5'- gCGCGAAAGCCGGGcauaaaaaaacGGCgccgcgugGCGCCGUg-- -3' miRNA: 3'- -GCGCUUUUGGUCU-----------UCG--------CGCGGUAgac -5' |
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24084 | 3' | -52.6 | NC_005262.1 | + | 61693 | 0.69 | 0.742484 |
Target: 5'- cCGUGAcGAUCAG-GGCGCGCCGg--- -3' miRNA: 3'- -GCGCUuUUGGUCuUCGCGCGGUagac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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