miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24084 5' -54.1 NC_005262.1 + 58912 0.66 0.805052
Target:  5'- aUCAGGccGGCGGCccG-ACCgauggCGCGc -3'
miRNA:   3'- aAGUCCuuCCGCUGuaCaUGGa----GCGC- -5'
24084 5' -54.1 NC_005262.1 + 10851 0.66 0.793388
Target:  5'- cUCAGG-GGGCGGCAUGagugagggCGCGg -3'
miRNA:   3'- aAGUCCuUCCGCUGUACaugga---GCGC- -5'
24084 5' -54.1 NC_005262.1 + 17253 0.66 0.785475
Target:  5'- -gCGGGAGcGGCGGCcgGcGCCgCGCu -3'
miRNA:   3'- aaGUCCUU-CCGCUGuaCaUGGaGCGc -5'
24084 5' -54.1 NC_005262.1 + 48435 0.66 0.775438
Target:  5'- ---cGGAcGGCGGCAUG-ACCaCGCGc -3'
miRNA:   3'- aaguCCUuCCGCUGUACaUGGaGCGC- -5'
24084 5' -54.1 NC_005262.1 + 28695 0.66 0.775438
Target:  5'- -gCGGGAAGGCGAC----GCCaCGCa -3'
miRNA:   3'- aaGUCCUUCCGCUGuacaUGGaGCGc -5'
24084 5' -54.1 NC_005262.1 + 59605 0.66 0.775438
Target:  5'- aUCAGGccguggucguGGGCGAgAaGaACCUCGCGc -3'
miRNA:   3'- aAGUCCu---------UCCGCUgUaCaUGGAGCGC- -5'
24084 5' -54.1 NC_005262.1 + 61577 0.67 0.754925
Target:  5'- -aCAGGGA-GCGGCuucgacgcgAUGUGCCgCGCGa -3'
miRNA:   3'- aaGUCCUUcCGCUG---------UACAUGGaGCGC- -5'
24084 5' -54.1 NC_005262.1 + 52739 0.67 0.712465
Target:  5'- cUCGGGcucAGGCGACGcugcggccUGUugCUgCGCGc -3'
miRNA:   3'- aAGUCCu--UCCGCUGU--------ACAugGA-GCGC- -5'
24084 5' -54.1 NC_005262.1 + 53766 0.68 0.70162
Target:  5'- --aAGGAGGGCGGgcUGUACgUCgGCGa -3'
miRNA:   3'- aagUCCUUCCGCUguACAUGgAG-CGC- -5'
24084 5' -54.1 NC_005262.1 + 5430 0.68 0.680834
Target:  5'- -cCGGGucuuuucgaugucccGGcGCGGCAUG-ACCUCGCGg -3'
miRNA:   3'- aaGUCCu--------------UC-CGCUGUACaUGGAGCGC- -5'
24084 5' -54.1 NC_005262.1 + 44842 0.68 0.64659
Target:  5'- -gCAGGAucAGGCGaauGCGUGgGCC-CGCGa -3'
miRNA:   3'- aaGUCCU--UCCGC---UGUACaUGGaGCGC- -5'
24084 5' -54.1 NC_005262.1 + 44726 0.69 0.613322
Target:  5'- gUUCaAGGAGcgcGGCGGCGUcaaggGCCUCGCa -3'
miRNA:   3'- -AAG-UCCUU---CCGCUGUAca---UGGAGCGc -5'
24084 5' -54.1 NC_005262.1 + 20180 0.69 0.602253
Target:  5'- gUCAGGAuggacAGGacgucggaGACcgGUGCCUCGUc -3'
miRNA:   3'- aAGUCCU-----UCCg-------CUGuaCAUGGAGCGc -5'
24084 5' -54.1 NC_005262.1 + 38843 0.7 0.536689
Target:  5'- cUCAGGAAGGCacGGCA---GCgCUCGCGu -3'
miRNA:   3'- aAGUCCUUCCG--CUGUacaUG-GAGCGC- -5'
24084 5' -54.1 NC_005262.1 + 41037 0.71 0.51535
Target:  5'- -cCGGaGAGGGCGAgAUGUuccccauCCUCGCu -3'
miRNA:   3'- aaGUC-CUUCCGCUgUACAu------GGAGCGc -5'
24084 5' -54.1 NC_005262.1 + 42285 0.71 0.494363
Target:  5'- -aCGGGcaccGGCGACGUGU-UCUCGCGc -3'
miRNA:   3'- aaGUCCuu--CCGCUGUACAuGGAGCGC- -5'
24084 5' -54.1 NC_005262.1 + 30968 0.72 0.463642
Target:  5'- -gCAGGcGGGCGAC---UACCUCGUGa -3'
miRNA:   3'- aaGUCCuUCCGCUGuacAUGGAGCGC- -5'
24084 5' -54.1 NC_005262.1 + 18294 0.72 0.453625
Target:  5'- uUUCGGGuAGGCGcGCcgGUucGCUUCGCGg -3'
miRNA:   3'- -AAGUCCuUCCGC-UGuaCA--UGGAGCGC- -5'
24084 5' -54.1 NC_005262.1 + 29482 0.72 0.424301
Target:  5'- -gCAGGgcGGCGACc-GUGCCguUCGCGa -3'
miRNA:   3'- aaGUCCuuCCGCUGuaCAUGG--AGCGC- -5'
24084 5' -54.1 NC_005262.1 + 54997 1.06 0.002281
Target:  5'- aUUCAGGAAGGCGACAUGUACCUCGCGc -3'
miRNA:   3'- -AAGUCCUUCCGCUGUACAUGGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.