miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24085 3' -53.7 NC_005262.1 + 61961 0.66 0.819459
Target:  5'- cAACCGCAUGCgcaGCcuGCGGcgaGCACa -3'
miRNA:   3'- cUUGGUGUACGag-CG--CGUCaagCGUG- -5'
24085 3' -53.7 NC_005262.1 + 49558 0.66 0.819459
Target:  5'- -cGCUGCGuccUGCUCGUGCguGGUcgacaUCGCGCc -3'
miRNA:   3'- cuUGGUGU---ACGAGCGCG--UCA-----AGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 40470 0.66 0.819459
Target:  5'- cGAgCGCGUGCUCGUGCGcggCGCc- -3'
miRNA:   3'- cUUgGUGUACGAGCGCGUcaaGCGug -5'
24085 3' -53.7 NC_005262.1 + 20773 0.66 0.819459
Target:  5'- -cGCCACGaGaUCGCGCAcg-CGCGCa -3'
miRNA:   3'- cuUGGUGUaCgAGCGCGUcaaGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 29654 0.66 0.809979
Target:  5'- cGAGCgGCAUGCcgccCGCGCc---CGCGCa -3'
miRNA:   3'- -CUUGgUGUACGa---GCGCGucaaGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 47786 0.66 0.809979
Target:  5'- cGAUCGCcUGCUCGuCGuCGGUgcCGCGCu -3'
miRNA:   3'- cUUGGUGuACGAGC-GC-GUCAa-GCGUG- -5'
24085 3' -53.7 NC_005262.1 + 1991 0.66 0.809979
Target:  5'- cGAGCgCgagGCAUGCgcCGCGCAGgcgaaaaCGCGCu -3'
miRNA:   3'- -CUUG-G---UGUACGa-GCGCGUCaa-----GCGUG- -5'
24085 3' -53.7 NC_005262.1 + 23551 0.66 0.809979
Target:  5'- --gUCAU-UGCUgCGCGCGGUcacgCGCACg -3'
miRNA:   3'- cuuGGUGuACGA-GCGCGUCAa---GCGUG- -5'
24085 3' -53.7 NC_005262.1 + 58576 0.66 0.806133
Target:  5'- -cGCCACG-GCgaUCGUGCAGgauacgcccucggUCGCGCc -3'
miRNA:   3'- cuUGGUGUaCG--AGCGCGUCa------------AGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 35583 0.66 0.800307
Target:  5'- cGAAUguUGUGCUCgGCGCGGgcUCgGCACa -3'
miRNA:   3'- -CUUGguGUACGAG-CGCGUCa-AG-CGUG- -5'
24085 3' -53.7 NC_005262.1 + 38904 0.66 0.800307
Target:  5'- -cGCCGCAguauuucuUGCgUCGCGCAGaUCgaugGCGCu -3'
miRNA:   3'- cuUGGUGU--------ACG-AGCGCGUCaAG----CGUG- -5'
24085 3' -53.7 NC_005262.1 + 29906 0.66 0.790454
Target:  5'- cGGGCCGCcgGC-CGaCGCAcgaucGUcUCGCGCg -3'
miRNA:   3'- -CUUGGUGuaCGaGC-GCGU-----CA-AGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 27921 0.66 0.790454
Target:  5'- uGAGCCGauagGUGCgCGCGUcGcgCGCACa -3'
miRNA:   3'- -CUUGGUg---UACGaGCGCGuCaaGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 23561 0.66 0.790454
Target:  5'- cAACCGCccGCcgCGCGCGGg-CGCAg -3'
miRNA:   3'- cUUGGUGuaCGa-GCGCGUCaaGCGUg -5'
24085 3' -53.7 NC_005262.1 + 35483 0.66 0.780432
Target:  5'- gGAACCAugccucgauCAUGCgcaCGCGCuug-CGCGCa -3'
miRNA:   3'- -CUUGGU---------GUACGa--GCGCGucaaGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 28948 0.66 0.780432
Target:  5'- aGggUCAUGUGCUCGCGCgcgAGgaagUCGgGg -3'
miRNA:   3'- -CuuGGUGUACGAGCGCG---UCa---AGCgUg -5'
24085 3' -53.7 NC_005262.1 + 43831 0.67 0.77025
Target:  5'- cGGCCGCGggccgGCcgCGCGCGGcggUGCGCc -3'
miRNA:   3'- cUUGGUGUa----CGa-GCGCGUCaa-GCGUG- -5'
24085 3' -53.7 NC_005262.1 + 47190 0.67 0.77025
Target:  5'- aGAACCAgAUGCUCGaaauggggcuCGCGGcacugUCGC-Cg -3'
miRNA:   3'- -CUUGGUgUACGAGC----------GCGUCa----AGCGuG- -5'
24085 3' -53.7 NC_005262.1 + 29281 0.67 0.77025
Target:  5'- -cGCCACAgccGCgUCGUcucGCAGaagUCGCGCg -3'
miRNA:   3'- cuUGGUGUa--CG-AGCG---CGUCa--AGCGUG- -5'
24085 3' -53.7 NC_005262.1 + 34523 0.67 0.77025
Target:  5'- --uUCACGaGCUCGuCGCGGUUCGgGa -3'
miRNA:   3'- cuuGGUGUaCGAGC-GCGUCAAGCgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.